Publications of Bram van Ginneken

Accepted or to appear

Papers in international journals

  1. B. van Ginneken. "Deep Learning for Triage of Chest Radiographs: Should Every Institution Train Its Own System?", Radiology. PDF DOI PMID

  2. M. Tammemagi, A.J. Ritchie, S. Atkar-Khattra, B. Dougherty, C. Sanghera, J.R. Mayo, R. Yuan, D. Manos, A.M. McWilliams, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, J.M.Seely, P. Burrowes, R. Bhatia, E.A.Haider, C. Boylan, C. Jacobs, B. van Ginneken, M.-S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Predicting Malignancy Risk of Screen Detected Lung Nodules – Mean Diameter or Volume", Journal of Thoracic Oncology. Abstract DOI

  3. P. Bandi, O. Geessink, Q. Manson, M. van Dijk, M. Balkenhol, M. Hermsen, B.E. Bejnordi, B. Lee, K. Paeng, A. Zhong, Q. Li, F.G. Zanjani, S. Zinger, K. Fukuta, D. Komura, V. Ovtcharov, S. Cheng, S. Zeng, J. Thagaard, A.B. Dahl, H. Lin, H. Chen, L. Jacobsson, M. Hedlund, M. Cetin, E. Halici, H. Jackson, R. Chen, F. Both, J. Franke, H. Kusters-Vandevelde, W. Vreuls, P. Bult, B. van Ginneken, J. van der Laak and G. Litjens. "From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge", IEEE Transactions on Medical Imaging. Abstract/PDF DOI

  4. S.J. van Riel, C. Jacobs, E.T. Scholten, R. Wittenberg, M.M. Winkler Wille, B. de Hoop, R. Sprengers, O.M. Mets, B. Geurts, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Observer variability for Lung-RADS categorisation of lung cancer screening CTs: impact on patient management", European Radiology. Abstract/PDF DOI PMID


2018

Papers in international journals

  1. G. Chlebus, A. Schenk, J.H. Moltz, B. van Ginneken, H.K. Hahn and H. Meine. "Automatic liver tumor segmentation in CT with fully convolutional neural networks and object-based postprocessing", Nature Scientific Reports 2018;8:15497. Abstract/PDF DOI PMID

  2. Z. Bian, J.-P. Charbonnier, J. Liu, D. Zhao, D.A. Lynch and B. van Ginneken. "Small airway segmentation in thoracic computed tomography scans: a machine learning approach", Physics in Medicine and Biology 2018;63:155024. Abstract/PDF DOI PMID

  3. R.C. Koesoemadinata, K. Kranzer, R. Livia, N. Susilawati, J. Annisa, N.N.M. Soetedjo, R. Ruslami, R. Philipsen, B. van Ginneken, R.D. Soetikno, R. van Crevel, B. Alisjahbana and P.C. Hill. "Computer-assisted chest radiography reading for tuberculosis screening in people living with diabetes mellitus", International Journal of Tuberculosis and Lung Disease 2018;22:1088-1094. Abstract/PDF DOI PMID

  4. S.M.A. Zaidi, S.S. Habib, B. Van Ginneken, R.A. Ferrand, J. Creswell, S. Khowaja and A. Khan. "Evaluation of the diagnostic accuracy of Computer-Aided Detection of tuberculosis on Chest radiography among private sector patients in Pakistan", Nature Scientific Reports 2018;8:12339. Abstract/PDF DOI PMID

  5. K. Chung, O.M. Mets, P.K. Gerke, C. Jacobs, A.M. den Harder, E.T. Scholten, M. Prokop, P.A. de Jong, B. van Ginneken and C.M. Schaefer-Prokop. "Brock malignancy risk calculator for pulmonary nodules: validation outside a lung cancer screening population", Thorax 2018;73:857-863. Abstract/PDF DOI PMID

  6. O.M. Mets, K. Chung, P. Zanen, E.T. Scholten, W.B. Veldhuis, B. van Ginneken, M. Prokop, C.M. Schaefer-Prokop and P.A. de Jong. "In vivo growth of 60 non-screening detected lung cancers: a computed tomography study", European Respiratory Journal 2018;51:1702183. Abstract/PDF DOI PMID

  7. F.G. Venhuizen, B. van Ginneken, B. Liefers, F. van Asten, V. Schreur, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "A Deep Learning Approach for Detection and Quantification of Intraretinal Cystoid Fluid in Multivendor Optical Coherence Tomography", Biomedical Optics Express 2018;9(4):1545-1569. Abstract/PDF DOI

  8. K. Chung, F. Ciompi, J.M. Scholten, E. Th. Goo, M. Prokop, C. Jacobs, B. van Ginneken and C.M. Schaefer-Prokop. "Visual Discrimination of Screen-detected Persistent from Transient Subsolid Nodules: an Observer Study", PLoS One 2018;13:e0191874. Abstract/PDF DOI PMID

  9. J.-P. Charbonnier, K. Chung, E.T. Scholten, E.M. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi. "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Nature Scientific Reports 2018;8:646. Abstract/PDF DOI PMID

  10. O.M. Mets, K. Chung, E.T. Scholten, W.B. Veldhuis, M. Prokop, B. van Ginneken, C.M. Schaefer-Prokop and P.A. de Jong. "Incidental perifissural nodules on routine chest computed tomography: lung cancer or not?", European Radiology 2018:1095-1101. Abstract/PDF DOI PMID

  11. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "Classification of CT Pulmonary Opacities as Perifissural Nodules: Reader Variability", Radiology 2018;288(3):867-875. Abstract/PDF DOI PMID

  12. A. Schreuder, C. Schaefer-Prokop, E. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Lung cancer risk to personalise annual and biennial follow-up computed tomography screening", Thorax 2018;73(7):626-633. Abstract/PDF DOI PMID

  13. G.E. Humpire Mamani, A. Setio, B. van Ginneken and C. Jacobs. "Efficient organ localization using multi-label convolutional neural networks in thorax-abdomen CT scans", Physics in Medicine and Biology 2018;63(8):085003. Abstract/PDF DOI PMID

  14. N. Lessmann, B. van Ginneken, M. Zreik, P.A. de Jong, B.D. de Vos, M.A. Viergever and I. Išgum. "Automatic calcium scoring in low-dose chest CT using deep neural networks with dilated convolutions", IEEE Transactions on Medical Imaging 2018;37(2):615-625. Abstract/PDF DOI arXiv PMID

  15. B. Ehteshami Bejnordi, M. Mullooly, R.M. Pfeiffer, S. Fan, P.M. Vacek, D.L. Weaver, S. Herschorn, L.A. Brinton, B. van Ginneken, N. Karssemeijer, A.H. Beck, G.L. Gierach, J.A.W.M. van der Laak and M.E. Sherman. "Using deep convolutional neural networks to identify and classify tumor-associated stroma in diagnostic breast biopsies", Modern Pathology 2018;31(10):1502-1512. Abstract/PDF DOI PMID

  16. T.L.A. van den Heuvel, D. de Bruijn, C.L. de Korte and B. van Ginneken. "Automated measurement of fetal head circumference using 2D ultrasound images", PLoS One 2018;13(8). Abstract/PDF DOI

  17. T.L.A. van den Heuvel, D. de Bruijn, D. Moens-van de Moesdijk, A. Beverdam, B. van Ginneken and C.L. de Korte. "Comparison Study of Low-Cost Ultrasound Devices for Estimation of Gestational Age in Resource-Limited Countries", Ultrasound in Medicine and Biology 2018;44(11):2250-2260. Abstract/PDF DOI PMID

  18. J. Melendez, L. Hogeweg, C.I. Sánchez, R.H.H.M. Philipsen, R.W. Aldridge, A. Hayward, I. Abubakar, B. van Ginneken and A. Story. "Accuracy of an automated system for tuberculosis detection on chest radiographs in high-risk screening", International Journal of Tuberculosis and Lung Disease 2018;22(5):567-571. Abstract/PDF DOI PMID

  19. M. Silva, M. Prokop, C. Jacobs, G. Capretti, N. Sverzellati, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, C. Galeone, A. Marchianò and U. Pastorino. "Long-term Active Surveillance of Screening Detected Subsolid Nodules is a Safe Strategy to Reduce Overtreatment", Journal of Thoracic Oncology 2018;13:1454-1463. Abstract/PDF DOI PMID

  20. M. Silva, C.M. Schaefer-Prokop, C. Jacobs, G. Capretti, F. Ciompi, B. van Ginneken, U. Pastorino and N. Sverzellati. "Detection of Subsolid Nodules in Lung Cancer Screening: Complementary Sensitivity of Visual Reading and Computer-Aided Diagnosis.", Investigative Radiology 2018;53(8):441-449. Abstract/PDF DOI PMID


Preprints

  1. G. Aresta, C. Jacobs, T. Araújo, A. Cunha, I. Ramos, B. van Ginneken and A. Campilho. "iW-Net: an automatic and minimalistic interactive lung nodule segmentation deep network", arXiv:1811.12789 2018. Abstract

  2. D. Belli, S. Hu, E. Sogancioglu and B. van Ginneken. "Chest X-Rays Image Inpainting with Context Encoders", arXiv:1812.00964 2018. Abstract

  3. W. Bulten, P. Bándi, J. Hoven, R. van de Loo, J. Lotz, N. Weiss, J. van der Laak, B. van Ginneken, C.H. van de Kaa and G. Litjens. "Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard", arXiv:1808.05883 2018. Abstract

  4. S. Kazeminia, C. Baur, A. Kuijper, B. van Ginneken, N. Navab, S. Albarqouni and A. Mukhopadhyay. "GANs for Medical Image Analysis", arXiv:1809.06222 2018. Abstract

  5. L. Maier-Hein, M. Eisenmann, A. Reinke, S. Onogur, M. Stankovic, P. Scholz, T. Arbel, H. Bogunovic, A.P. Bradley, A. Carass, C. Feldmann, A.F. Frangi, P.M. Full, B. van Ginneken, A. Hanbury, K. Honauer, M. Kozubek, B.A. Landman, K. März, O. Maier, K. Maier-Hein, B.H. Menze, H. Müller, P.F. Neher, W. Niessen, N. Rajpoot, G.C. Sharp, K. Sirinukunwattana, S. Speidel, C. Stock, D. Stoyanov, A.A. Taha, F. van der Sommen, C.-W. Wang, M.-A. Weber, G. Zheng, P. Jannin and A. Kopp-Schneider. "Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions", arXiv:1806.02051 2018. Abstract

  6. E. Sogancioglu, S. Hu, D. Belli and B. van Ginneken. "Chest X-ray Inpainting with Deep Generative Models", arXiv:1809.01471 2018. Abstract


Papers in conference proceedings

  1. G. Aresta, T. Araujo, C. Jacobs, B. van Ginneken, A. Cunha, I. Ramos and A. Campilho. "Towards an automatic lung cancer screening system in low dose computed tomography", in: MICCAI Workshop: Thoracic Image Analysis, volume 11040 of Lecture Notes in Computer Science, 2018. Abstract/PDF DOI

  2. M. Ghafoorian, J. Teuwen, R. Manniesing, F.-E. de Leeuw, B. van Ginneken, N. Karssemeijer and B. Platel. "Student Beats the Teacher: Deep Neural Networks for Lateral Ventricles Segmentation in Brain MR", in: Medical Imaging, volume 10574, 2018, page 105742U. Abstract/PDF DOI arXiv

  3. N. Lessmann, B. van Ginneken and I. Išgum. "Iterative convolutional neural networks for automatic vertebra identification and segmentation in CT images", in: Medical Imaging, volume 10574 of Proceedings of the SPIE, 2018. Abstract/PDF DOI

  4. C. Gonzalez-Gonzalo, B. Liefers, B. van Ginneken and C.I. Sanchez. "Improving weakly-supervised lesion localization with iterative saliency map refinement", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  5. S.C. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Stacked Bidirectional Convolutional LSTMs for 3D Non-contrast CT Reconstruction from Spatiotemporal 4D CT", in: Medical Imaging with Deep Learning, 2018. Abstract/PDF URL

  6. N. Lessmann, B. van Ginneken, P.A. de Jong and I. Išgum. "Iterative fully convolutional neural networks for automatic vertebra segmentation", in: Medical Imaging with Deep Learning, 2018. Abstract arXiv


Abstracts

  1. B. van Ginneken. "Deep Machine Learning for Screening LDCT", in: Journal of Thoracic Oncology, 2018. Abstract/PDF

  2. K. Koschmieder, A. van der Eerden, B. van Ginneken and R. Manniesing. "Brain Extraction in Susceptibility-Weighted MR Images using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  3. M. Meijs, A. Patel, S.C. van de Leemput, B. van Ginneken, M. Prokop and R. Manniesing. "Fast, Robust and Accurate Segmentation of the Complete Cerebral Vasculature in 4D-CTA using Deep Learning", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract/PDF

  4. M. Hall, A.A.A. Setio, S. Sheridan, M. Sproule, M. Williams, E.T. Scholten, C. Jacobs, B. Van Ginneken and R.G.. "Computer aided detection (CAD) and scoring of lung nodules in a Scottish lung cancer screening programme", in: European Congress of Radiology, 2018. Abstract DOI

  5. A. Schreuder, B. van Ginneken, E.T. Scholten, C. Jacobs, M. Prokop, N. Sverzellati, S.R. Desai, A. Devaraj and C.M. Schaefer-Prokop. "What is a perifissural nodule? Low inter-observer agreement in NLST data", in: European Societies of Cardiovascular Radiology and Thoracic Imaging joint meeting, 2018. Abstract

  6. A. Schreuder, C. Jacobs, L. Gallardo-Estrella, C.M. Schaefer-Prokop, W. Fukumoto, M. Prokop and B. van Ginneken. "Normalized emphysema score progression: An improved CT biomarker for mortality", in: Annual Meeting of the Radiological Society of North America, 2018. Abstract

  7. A. Schreuder, C. Jacobs, N. Lessmann, E.T. Scholten, I. Isgum, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Improved Lung Cancer and Mortality Prediction Accuracy Using Survival Models Based on Semi-Automatic CT Image Measurements", in: World Conference on Lung Cancer, 2018. Abstract


Theses

  1. K. Chung. "Malignancy risk estimation of subsolid nodules", PhD thesis, Radbouduniversity, Nijmegen, The Netherlands, 2018. Abstract/PDF URL


2017

Papers in international journals

  1. B.E. Bejnordi, G. Zuidhof, M. Balkenhol, M. Hermsen, P. Bult, B. van Ginneken, N. Karssemeijer, G. Litjens and J. van der Laak. "Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images", Journal of Medical Imaging 2017;4:044504. Abstract/PDF DOI PMID

  2. B. Ehteshami Bejnordi, M. Veta, P.J. van Diest, B. van Ginneken, N. Karssemeijer, G. Litjens, J.A.W.M. van der Laak, the CAMELYON16 Consortium, M. Hermsen, Q.F. Manson, M. Balkenhol, O. Geessink, N. Stathonikos, M.C. van Dijk, P. Bult, F. Beca, A.H. Beck, D. Wang, A. Khosla, R. Gargeya, H. Irshad, A. Zhong, Q. Dou, Q. Li, H. Chen, H.-J. Lin, P.-A. Heng, C. Haß, E. Bruni, Q. Wong, U. Halici, M. Ü. Öner, R. Cetin-Atalay, M. Berseth, V. Khvatkov, A. Vylegzhanin, O. Kraus, M. Shaban, N. Rajpoot, R. Awan, K. Sirinukunwattana, T. Qaiser, Y.-W. Tsang, D. Tellez, J. Annuscheit, P. Hufnagl, M. Valkonen, K. Kartasalo, L. Latonen, P. Ruusuvuori, K. Liimatainen, S. Albarqouni, B. Mungal, A. George, S. Demirci, N. Navab, S. Watanabe, S. Seno, Y. Takenaka, H. Matsuda, H. Ahmady Phoulady, V. Kovalev, A. Kalinovsky, V. Liauchuk, G. Bueno, M.M. Fernandez-Carrobles, I. Serrano, O. Deniz, D. Racoceanu and R. Venâncio. "Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer", Journal of the American Medical Association 2017;318:2199-2210. Abstract/PDF DOI PMID

  3. L. Gallardo-Estrella, E. Pompe, P.A. de Jong, C. Jacobs, E.M. van Rikxoort, M. Prokop, C.I. Sánchez and B. van Ginneken. "Normalized emphysema scores on low dose CT: Validation as an imaging biomarker for mortality", PLoS One 2017;12:e0188902. Abstract/PDF DOI PMID

  4. S.J. van Riel, F. Ciompi, M.M. Winkler Wille, A. Dirksen, S. Lam, E.T. Scholten, S.E. Rossi, N. Sverzellati, M. Naqibullah, R. Wittenberg, M.C. Hovinga-de Boer, M. Snoeren, L. Peters-Bax, O. Mets, M. Brink, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of pulmonary nodules in screening CTs: Comparison between a computer model and human observers", PLoS One 2017;12:e0185032. Abstract/PDF DOI PMID

  5. L. Gallardo Estrella, E. Pompe, J.-M. Kuhnigk, D.A. Lynch, S.P. Bhatt, B. van Ginneken and E.M. van Rikxoort. "Computed tomography quantification of tracheal abnormalities in COPD and their influence on airflow limitation", Medical Physics 2017;44:3594-3603. Abstract/PDF DOI PMID

  6. A. Devaraj, B. van Ginneken, A. Nair and D. Baldwin. "Use of Volumetry for Lung Nodule Management: Theory and Practice", Radiology 2017;284:630-644. Abstract/PDF DOI PMID

  7. J. Melendez, R.H.H.M. Philipsen, P. Chanda-Kapata, V. Sunkutu, N. Kapata and B. van Ginneken. "Automatic versus human reading of chest X-rays in the Zambia National Tuberculosis Prevalence Survey", International Journal of Tuberculosis and Lung Disease 2017;21:880-886. Abstract/PDF DOI PMID

  8. F.G. Venhuizen, B. van Ginneken, B. Liefers, Schreur, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Robust Total Retina Thickness Segmentation in Optical Coherence Tomography Images using Convolutional Neural Networks", Biomedical Optics Express 2017;8(7):3292-3316. Abstract/PDF DOI PMID

  9. F.G. Venhuizen, B. van Ginneken, F. van Asten, M.J. van Grinsven, S. Fauser, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automated Staging of Age-Related Macular Degeneration Using Optical Coherence Tomography", Investigative Ophthalmology and Visual Science 2017;58(4):2318-2328. Abstract/PDF DOI PMID

  10. B.C. Lassen-Schmidt, J.-M. Kuhnigk, O. Konrad, B. van Ginneken and E. van Rikxoort. "Fast interactive segmentation of the pulmonary lobes from thoracic computed tomography data", Physics in Medicine and Biology 2017;62(16):6649-6665. Abstract/PDF DOI PMID

  11. M. Ghafoorian, N. Karssemeijer, T. Heskes, I. van Uden, C. Sánchez, G. Litjens, F.-E. de Leeuw, B. van Ginneken, E. Marchiori and B. Platel. "Location Sensitive Deep Convolutional Neural Networks for Segmentation of White Matter Hyperintensities", Nature Scientific Reports 2017;7(1):5110. Abstract/PDF DOI arXiv PMID

  12. K. Chung, C. Jacobs, E.T. Scholten, O.M. Mets, I. Dekker, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Malignancy estimation of Lung-RADS criteria for subsolid nodules on CT: accuracy of low and high risk spectrum when using NLST nodules", European Radiology 2017;27:4672-4679. Abstract/PDF DOI PMID

  13. K. Chung, C. Jacobs, E.T. Scholten, J.M. Goo, H. Prosch, N. Sverzellati, F. Ciompi, O.M. Mets, P.K. Gerke, M. Prokop, B. van Ginneken and C.M. Schaefer-Prokop. "Lung-RADS Category 4X: Does It Improve Prediction of Malignancy in Subsolid Nodules?", Radiology 2017;284(1):264-271. Abstract/PDF DOI PMID

  14. S.J. van Riel, F. Ciompi, C. Jacobs, M.M. Winkler Wille, E.T. Scholten, M. Naqibullah, S. Lam, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Malignancy risk estimation of screen-detected nodules at baseline CT: comparison of the PanCan model, Lung-RADS and NCCN guidelines", European Radiology 2017;27(10):4019-4029. Abstract/PDF DOI PMID

  15. B. van Ginneken. "Fifty years of computer analysis in chest imaging: rule-based, machine learning, deep learning", Radiological Physics and Technology 2017;10(1):23-32. Abstract/PDF DOI PMID

  16. R. Manniesing, M.T. Oei, L.J. Oostveen, J. Melendez, E.J. Smit, B. Platel, C.I. Sánchez, F.J. Meijer, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D Computed Tomography", Nature Scientific Reports 2017;7(119). Abstract/PDF DOI PMID

  17. L. Hogeweg, C.I. Sánchez, P. Maduskar, R.H.H.M. Philipsen and B. van Ginneken. "Fast and effective quantification of symmetry in medical images for pathology detection: application to chest radiography", Medical Physics 2017;44(6):2242-2256. Abstract/PDF DOI PMID

  18. E. Pompe, P.A. de Jong, D.A. Lynch, N. Lessmann, I. Išgum, B. van Ginneken, J.-W. Lammers and F.A. Mohamed Hoesein. "Computed tomographic findings in subjects who died from respiratory disease in the National Lung Screening Trial", European Respiratory Journal 2017;49:1601814. Abstract/PDF DOI PMID

  19. M. Meijs, A. Patel, S. van de Leemput, M. Prokop, E.J. van Dijk, F.-E. de Leeuw, F.J.A. Meijer, B. van Ginneken and R. Manniesing. "Robust Segmentation of the Full Cerebral Vasculature in 4D CT Images of Suspected Stroke Patients", Nature Scientific Reports 2017;7. Abstract/PDF DOI PMID

  20. A. Patel, B. van Ginneken, F.J.A. Meijer, E.J. van Dijk, M. Prokop and R. Manniesing. "Robust Cranial Cavity Segmentation in CT and CT Perfusion Images of Trauma and Suspected Stroke Patients", Medical Image Analysis 2017;36:216-228. Abstract/PDF DOI PMID

  21. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi. "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis 2017;36:52-60. Abstract/PDF DOI PMID

  22. O.M. Mets, P.A. de Jong, E.T. Scholten, K. Chung, B. van Ginneken and C.M. Schaefer-Prokop. "Subsolid pulmonary nodule morphology and associated patient characteristics in a routine clinical population", European Radiology 2017;27(2):689-696. Abstract/PDF DOI PMID

  23. F. Ciompi, K. Chung, S.J. van Riel, A.A.A. Setio, P.K. Gerke, C. Jacobs, E.T. Scholten, C.M. Schaefer-Prokop, M.M.W. Wille, A. Marchiano, U. Pastorino, M. Prokop and B. van Ginneken. "Towards automatic pulmonary nodule management in lung cancer screening with deep learning", Nature Scientific Reports 2017(46479). Abstract/PDF DOI arXiv PMID

  24. J.G. Cohen, H. Kim, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee, J.M. Goo and C.M. Park. "Comparison of the effects of model-based iterative reconstruction and filtered back projection algorithms on software measurements in pulmonary subsolid nodules", European Radiology 2017;27:3266-3274. Abstract/PDF DOI PMID

  25. T. Kooi, B. van Ginneken, N. Karssemeijer and A. den Heeten. "Discriminating solitary cysts from soft tissue lesions in mammography using a pretrained deep convolutional neural network", Medical Physics 2017;44:1017-1027. Abstract/PDF DOI PMID

  26. T. Kooi, G. Litjens, B. van Ginneken, A. Gubern-Merida, C.I. Sanchez, R. Mann, A. den Heeten and N. Karssemeijer. "Large scale deep learning for computer aided detection of mammographic lesions", Medical Image Analysis 2017;35:303-312. Abstract/PDF DOI PMID

  27. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, S. Fauser, T. Theelen and C.I. Sánchez. "Automatic detection of the foveal center in optical coherence tomography", Biomedical Optics Express 2017;8(11):5160-5178. Abstract/PDF DOI PMID

  28. G. Litjens, T. Kooi, B. Ehteshami Bejnordi, A.A.A. Setio, F. Ciompi, M. Ghafoorian, J. van der Laak, B. van Ginneken and C. Sánchez. "A Survey on Deep Learning in Medical Image Analysis", Medical Image Analysis 2017;42:60-88. Abstract/PDF DOI arXiv PMID

  29. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Interleaving cerebral CT perfusion with neck CT angiography. Part II: clinical implementation and image quality", European Radiology 2017;27:2411-2418. Abstract/PDF DOI PMID

  30. M.T.H. Oei, F.J.A. Meijer, W.-J. van der Woude, E.J. Smit, B. van Ginneken, M. Prokop and R. Manniesing. "Interleaving cerebral CT perfusion with neck CT angiography part I. Proof of concept and accuracy of cerebral perfusion values.", European Radiology 2017;27:2649-2656. Abstract DOI PMID


Papers in conference proceedings

  1. M. Ghafoorian, A. Mehrtash, T. Kapur, N. Karssemeijer, E. Marchiori, M. Pesteie, C.R.G. Guttmann, F.-E. de Leeuw, C.M. Tempany, B. van Ginneken, A. Fedorov, P. Abolmaesumi, B. Platel and W.M. Wells. "Transfer Learning for Domain Adaptation in MRI: Application in Brain Lesion Segmentation.", in: Medical Image Computing and Computer-Assisted Intervention, volume 10435 of Lecture Notes in Computer Science, 2017, pages 516-524. Abstract/PDF DOI arXiv

  2. G.E. Humpire Mamani, A.A.A. Setio, B. van Ginneken and C. Jacobs. "Organ detection in thorax abdomen CT using multi-label convolutional neural networks", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI

  3. A. Patel, S. van de Leemput, M. Prokop, B. van Ginneken and R. Manniesing. "Automatic Cerebrospinal Fluid Segmentation in Non-Contrast CT Images Using a 3D Convolutional Network", in: Medical Imaging, volume 10134 of Proceedings of the SPIE, 2017. Abstract/PDF DOI

  4. P. Bandi, R. van de Loo, M. Intezar, D. Geijs, F. Ciompi, B. van Ginneken, J. van der Laak and G. Litjens. "Comparison of Different Methods for Tissue Segmentation In Histopathological Whole-Slide Images", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 591-595. Abstract/PDF DOI arXiv

  5. F. Ciompi, O.G.F. Geessink, B. Ehteshami Bejnordi, G.S. de Souza, A. Baidoshvili, G. Litjens, B. van Ginneken, I.D. Nagtegaal and J.A. van der Laak. "The importance of stain normalization in colorectal tissue classification with convolutional networks", in: IEEE International Symposium on Biomedical Imaging, 2017, pages 160-163. Abstract/PDF DOI arXiv

  6. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "A step towards measuring the fetal head circumference with the use of obstetric ultrasound in a low resource setting", in: Medical Imaging, volume 10139 of Proceedings of the SPIE, 2017, page 101390V. Abstract/PDF DOI

  7. T.L.A. van den Heuvel, H. Petros, S. Santini, C.L. de Korte and B. van Ginneken. "Combining Automated Image Analysis with Obstetric Sweeps for Prenatal Ultrasound Imaging in Developing Countries", in: MICCAI Workshop: Point-of-Care Ultrasound, volume 10549 of Lecture Notes in Computer Science, 2017, pages 105-112. Abstract/PDF DOI

  8. B. Liefers, F.G. Venhuizen, T. Theelen, C. Hoyng, B. van Ginneken and C.I. Sanchez. "Fovea Detection in Optical Coherence Tomography using Convolutional Neural Networks", in: Medical Imaging, volume 10133 of Proceedings of the SPIE, 2017, page 1013302. Abstract/PDF DOI


Abstracts

  1. J. Bukala, G.E. Humpire Mamani, E. Scholten, M. Prokop, B. van Ginneken and C. Jacobs. "Fully Automatic Measurement of the Splenic Volume in CT with U-Net Convolutional Neural Networks", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  2. A. Schreuder, C.M. Schaefer-Prokop, E.T. Scholten, C. Jacobs, M. Prokop and B. van Ginneken. "Use of a risk model combining clinical information and CT findings to customize follow-up intervals in lung cancer screening", in: Annual Meeting of the Radiological Society of North America, 2017. Abstract

  3. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C.M. Schaefer-Prokop, M. Prokop, A. Marchiano and U. Pastorino. "Non-solid and Part-solid Nodules: Comparison Between Visual and Computer Aided Detection", in: World Congress of Thoracic Imaging, 2017. Abstract

  4. F.G. Venhuizen, S. Schaffhauser, V. Schreur, B. Liefers, B. van Ginneken, C.B. Hoyng, T. Theelen, E.K. de Jong and C.I. Sánchez. "Fully automated detection of hyperreflective foci in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract

  5. M. Silva, G. Capretti, N. Sverzellati, C. Jacobs, F. Ciompi, B. van Ginneken, C. Schaefer-Prokop, A. Marchianò and U. Pastorino. "Subsolid and part-solid nodules in lung cancer screening: comparison between visual and computer-aided detection", in: European Congress of Radiology, 2017. Abstract

  6. M. Meijs, S. Pegge, M. Prokop, B. van Ginneken, F.J.A. Meijer and R. Manniesing. "Detection of vessel occlusion in acute stroke is facilitated by color-coded 4D-CTA", in: European Congress of Radiology, 2017. Abstract/PDF

  7. A. Patel, F.J.A. Meijer, M. Prokop, B. van Ginneken and R. Manniesing. "Robust segmentation of the cranial cavity in non-contrast CT and CT perfusion of the brain", in: European Congress of Radiology, 2017. Abstract

  8. B. Liefers, F.G. Venhuizen, V. Schreur, B. van Ginneken, C. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of the foveal center in optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2017. Abstract


Theses

  1. T. Kockelkorn. "Interactive texture analysis in chest CT Scans", PhD thesis, Utrecht University, 2017. Abstract/PDF

  2. J. Charbonnier. "Segmentation & quantification of airways and blood vessels in chest CT", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2017. Abstract/PDF URL


2016

Papers in international journals

  1. T.T. Kockelkorn, R. Ramos, J. Ramos, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Optimization Strategies for Interactive Classification of Interstitial Lung Disease Textures", Frontiers in ICT 2016;3:33. Abstract/PDF DOI

  2. M. Pompe, E. van Rikxoort, O. Mets, J. Charbonnier, J. Kuhnigk, H. de Koning, M. Oudkerk, R. Vliegenthart, P. Zanen, J. Lammers, B. van Ginneken, P. de Jong and F. Mohamed Hoesein. "Follow-up of CT-derived airway wall thickness: Correcting for changes in inspiration level improves reliability", European Journal of Radiology 2016;85:2008-2013. Abstract/PDF DOI PMID

  3. T.T.J.P. Kockelkorn, P.A. de Jong, C.M. Schaefer-Prokop, R. Wittenberg, A.M. Tiehuis, H.A. Gietema, J.C. Grutters, M.A. Viergever and B. van Ginneken. "Semi-automatic classification of textures in thoracic CT scans", Physics in Medicine and Biology 2016;61(16):5906-5924. Abstract/PDF DOI PMID

  4. H. Greenspan, R.M. Summers and B. van Ginneken. "Deep Learning in Medical Imaging: Overview and Future Promise of an Exciting New Technique", IEEE Transactions on Medical Imaging 2016;35(5):1153-1159. PDF DOI

  5. E. Pompe, P.A. de Jong, E.M. van Rikxoort, L. Gallardo Estrella, W.U. de Jong, R. Vliegenthart, M. Oudkerk, C.M. van der Aalst, B. van Ginneken, J.-W.J. Lammers and F.A. Mohamed Hoesein. "Smokers with emphysema and small airway disease on computed tomography have lower bone density", International Journal of Chronic Obstructive Pulmonary Disease 2016;11:1207-1216. Abstract/PDF DOI PMID

  6. G. Litjens, C.I. Sanchez, N. Timofeeva, M. Hermsen, I. Nagtegaal, I. Kovacs, C. Hulsbergen-van de Kaa, P. Bult, B. van Ginneken and J. van der Laak. "Deep learning as a tool for increased accuracy and efficiency of histopathological diagnosis", Nature Scientific Reports 2016;6:26286. Abstract/PDF DOI PMID

  7. J.G. Cohen, J.M. Goo, R.-E. Yoo, S.B. Park, B. van Ginneken, G.R. Ferretti, C.H. Lee and C.M. Park. "The effect of late-phase contrast enhancement on semi-automatic software measurements of CT attenuation and volume of part-solid nodules in lung adenocarcinomas", European Journal of Radiology 2016;85(6):1174-1180. Abstract/PDF DOI PMID

  8. J. Melendez, C.I. Sanchez, R.H.H.M. Philipsen, P. Maduskar, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "An automated tuberculosis screening strategy combining X-ray-based computer-aided detection and clinical information", Nature Scientific Reports 2016;6:25265. Abstract/PDF DOI PMID

  9. J.G. Cohen, J.M. Goo, R.-E. Yoo, C.M. Park, C.H. Lee, B. van Ginneken, D.H. Chung and Y.T. Kim. "Software performance in segmenting ground-glass and solid components of subsolid nodules in pulmonary adenocarcinomas", European Radiology 2016;26(12):4465-4474. Abstract/PDF DOI PMID

  10. R. Manniesing, C. Brune, B. van Ginneken and M. Prokop. "A 4D CT Digital Phantom of an Individual Human Brain for Perfusion Analysis", PeerJ 2016;4:e2683. Abstract/PDF DOI PMID

  11. O.M. Mets, P.A. de Jong, K. Chung, J.-W.J. Lammers, B. van Ginneken and C.M. Schaefer-Prokop. "Fleischner recommendations for the management of subsolid pulmonary nodules: high awareness but limited conformance - a survey study", European Radiology 2016;26:3840-3849. Abstract/PDF DOI PMID

  12. A.J. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Schmidt, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J.M. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi, M.S. Tsao, S. Lam and the Pan-Canadian Early Detection of Lung Cancer Study Group. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT Scans", Journal of Thoracic Oncology 2016;11:709-717. Abstract/PDF DOI PMID

  13. A.A.A. Setio, F. Ciompi, G. Litjens, P. Gerke, C. Jacobs, S. van Riel, M.W. Wille, M. Naqibullah, C. Sánchez and B. van Ginneken. "Pulmonary nodule detection in CT images: false positive reduction using multi-view convolutional networks", IEEE Transactions on Medical Imaging 2016;35(5):1160-1169. Abstract/PDF DOI PMID

  14. M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez.. "Fast Convolutional Neural Network Training Using Selective Data Sampling: Application to Hemorrhage Detection in Color Fundus Images", IEEE Transactions on Medical Imaging 2016;35(5):1273-1284. Abstract/PDF DOI PMID

  15. S. Schalekamp, N. Karssemeijer, A.M. Cats, B. De Hoop, B.H.J. Geurts, O. Berger-Hartog, B. van Ginneken and C.M. Schaefer-Prokop. "The Effect of Supplementary Bone-Suppressed Chest Radiographs on the Assessment of a Variety of Common Pulmonary Abnormalities: Results of an Observer Study", Journal of Thoracic Imaging 2016;31(2):119-125. Abstract/PDF DOI PMID

  16. M.J.J.P. van Grinsven, T. Theelen, L. Witkamp, J. van der Heijden, J.P.H. van de Ven, C.B. Hoyng, B. van Ginneken and C.I. Sánchez. "Automatic differentiation of color fundus images containing drusen or exudates using a contextual spatial pyramid approach", Biomedical Optics Express 2016;7(3):709-725. Abstract/PDF DOI PMID

  17. P. Maduskar, R.H.M.M. Philipsen, J. Melendez, E. Scholten, D. Chanda, H. Ayles, C.I. Sánchez and B. van Ginneken. "Automatic detection of pleural effusion in chest radiographs", Medical Image Analysis 2016;28:22-32. Abstract/PDF DOI PMID

  18. J. Melendez, B. van Ginneken, P. Maduskar, R. Philipsen, H. Ayles and C.I. Sánchez. "On Combining Multiple-Instance Learning and Active Learning for Computer-Aided Detection of Tuberculosis", IEEE Transactions on Medical Imaging 2016;35(4):1013-1024. Abstract/PDF DOI PMID

  19. C. Jacobs, E.M. van Rikxoort, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology 2016;26:2139-2147. Abstract/PDF DOI PMID

  20. L. Gallardo-Estrella, D.A. Lynch, M. Prokop, D. Stinson, J. Zach, P.F. Judy, B. van Ginneken and E.M. van Rikxoort. "Normalizing computed tomography data reconstructed with different filter kernels: effect on emphysema quantification", European Radiology 2016;26:478-486. Abstract/PDF DOI PMID

  21. R. Manniesing, M.T.H. Oei, B. van Ginneken and M. Prokop. "Quantitative Dose Dependency Analysis of Whole-Brain CT Perfusion Imaging", Radiology 2016;278(1):190-197. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. N. Lessmann, I. Išgum, A.A. Setio, B.D. de Vos, F. Ciompi, P.A. de Jong, M. Oudkerk, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Deep convolutional neural networks for automatic coronary calcium scoring in a screening study with low-dose chest CT", in: Medical Imaging, volume 9785 of Proceedings of the SPIE, 2016, pages 978511-1 - 978511-6. Abstract/PDF DOI

  2. M. Ghafoorian, N. Karssemeijer, T. Heskes, I.W.M. van Uden, F.-E. de Leeuw, E. Marchiori, B. van Ginneken and B. Platel. "Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation", in: IEEE International Symposium on Biomedical Imaging, 2016, pages 1414-1417. Abstract/PDF DOI


Abstracts

  1. J. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, D. Lynch, B. Make and E. van Rikxoort. "Airway Dimensions in Current and Former smokers: an independent predictor of Airflow Obstruction and Respiratory Quality of Life in Cigarette Smokers", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  2. M. Meijs, M. Prokop, F.J. Meijer, B. van Ginneken and R. Manniesing. "Segmentation of small cerebral vessels on CT perfusion images of patients with suspected acute stroke", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract/PDF

  3. R. Manniesing, S. van de Leemput, M. Prokop and B. van Ginneken. "White Matter and Gray Matter Segmentation in 4D CT Images of Acute Ischemic Stroke Patients: a Feasibility Study", in: Annual Meeting of the Radiological Society of North America, 2016. Abstract

  4. E.T. Scholten, C. Jacobs, C.M. Schaefer-Prokop, J. Rühaak, H.J. de Koning, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Temporal subtraction of chest CT in lung cancer screening", in: European Congress of Radiology, 2016. Abstract

  5. F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Fully automated quantification of intraretinal cysts in 3D optical coherence tomography", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  6. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of hemorrhages on color fundus images using deep learning", in: Association for Research in Vision and Ophthalmology, 2016. Abstract

  7. F. Ciompi, K. Chung, A.A.A. Setio, S.J. van Riel, E.T. Scholten, P.K. Gerke, C. Jacobs, U. Pastorino, A. Marchiano, M.M.W. Wille, M. Prokop and B. van Ginneken. "Pulmonary nodule type classification with convolutional networks", in: Medical Image Computing and Computer-Assisted Intervention, 2016. Abstract/PDF


Theses

  1. M. van Grinsven. "Automated analysis of retinal images for detection of age-related macular degeneration and diabetic retinopathy", PhD thesis, Radboud University, Nijmegen, The Netherlands, 2016. Abstract/PDF URL


2015

Papers in international journals

  1. A. Steiner, C. Mangu, J. van den Hombergh, H. van Deutekom, B. van Ginneken, P. Clowes, F. Mhimbira, S. Mfinanga, A. Rachow, K. Reither and M. Hoelscher. "Screening for pulmonary tuberculosis in a Tanzanian prison and computer-aided interpretation of chest X-rays", Public Health Action 2015;5(4):249-254. Abstract/PDF DOI PMID

  2. A.A.A. Setio, C. Jacobs, J. Gelderblom and B. van Ginneken. "Automatic detection of large pulmonary solid nodules in thoracic CT images", Medical Physics 2015;42:5642-5653. Abstract/PDF DOI PMID

  3. F. Ciompi, B. de Hoop, S.J. van Riel, K. Chung, E.T. Scholten, M. Oudkerk, P.A. de Jong, M. Prokop and B. van Ginneken. "Automatic classification of pulmonary peri-fissural nodules in computed tomography using an ensemble of 2D views and a convolutional neural network out-of-the-box", Medical Image Analysis 2015;26:195-202. Abstract/PDF DOI PMID

  4. R. Philipsen, C.I. Sánchez, P. Maduskar, J. Melendez, L. Peters-Bax, J. Peter, R. Dawson, G. Theron, K. Dheda and B. van Ginneken. "Automated chest-radiography as a triage for Xpert testing in resource-constrained settings: a prospective study of diagnostic accuracy and costs", Nature Scientific Reports 2015;5. Abstract/PDF DOI PMID

  5. E.J. Smit, E.-J. Vonken, F.J.A. Meijer, J.W. Dankbaar, A.D. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Timing-Invariant CT Angiography Derived from CT Perfusion Imaging in Acute Stroke: A Diagnostic Performance Study", American Journal of Neuroradiology 2015;36:1834-1838. Abstract/PDF DOI PMID

  6. M.M. Winkler Wille, S.J. van Riel, Z. Saghir, A. Dirksen, J.H. Pedersen, C. Jacobs, L.H. Thomsen, E.T. Scholten, L.T. Skovgaard and B. van Ginneken. "Predictive Accuracy of the PanCan Lung Cancer Risk Prediction Model -External Validation based on CT from the Danish Lung Cancer Screening Trial", European Radiology 2015;25:3093-3099. Abstract/PDF DOI PMID

  7. S.J. van Riel, C.I. Sánchez, A.A. Bankier, D.P. Naidich, J. Verschakelen, E.T. Scholten, P.A. de Jong, C. Jacobs, E. van Rikxoort, L. Peters-Bax, M. Snoeren, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Observer Variability for Classification of Pulmonary Nodules on Low-Dose CT Images and Its Effect on Nodule Management", Radiology 2015;277(3):863-871. Abstract/PDF DOI PMID

  8. E. Pompe, E.M. van Rikxoort, M. Schmidt, J. Rühaak, L. Gallardo-Estrella, R. Vliegenthart, M. Oudkerk, H.J. de Koning, B. van Ginneken, P.A. de Jong, J.-W.J. Lammers and F.A.A. Mohamed Hoesein. "Parametric response mapping adds value to current computed tomography biomarkers in diagnosing chronic obstructive pulmonary disease", American Journal of Respiratory and Critical Care Medicine 2015;191:1084-1086. PDF DOI PMID

  9. J. Ramos, T. Kockelkorn, I. Ramos, R. Ramos, B. van Ginneken, M. Viergever, A. Campilho and J. Grutters. "Content Based Image Retrieval by Metric Learning from Radiology Reports: Application to Interstitial Lung Diseases", IEEE Journal of Biomedical Health Informatics 2015;20(1):281-292. Abstract/PDF DOI PMID

  10. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sánchez and B. van Ginneken. "Localized energy-based normalization of medical images: application to chest radiography", IEEE Transactions on Medical Imaging 2015;34:1965-75. Abstract/PDF DOI PMID

  11. L. Hogeweg, C.I. Sánchez, P. Maduskar, R. Philipsen, A. Story, R. Dawson, G. Theron, K. Dheda, L. Peters-Bax and B. van Ginneken. "Automatic detection of tuberculosis in chest radiographs using a combination of textural, focal, and shape abnormality analysis", IEEE Transactions on Medical Imaging 2015;34(12):2429-2442. Abstract/PDF DOI PMID

  12. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, H.J.M. Groen, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Airway wall thickness associated with forced expiratory volume in 1 second decline and development of airflow limitation", European Respiratory Journal 2015;45:644-651. Abstract/PDF DOI PMID

  13. B.C. Lassen, C. Jacobs, J.-M. Kuhnigk, B. van Ginneken and E.M. van Rikxoort. "Robust semi-automatic segmentation of pulmonary subsolid nodules in chest computed tomography scans", Physics in Medicine and Biology 2015;60:1307-1323. Abstract/PDF DOI PMID

  14. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, C.B. Hoyng, T. Theelen, C.C.W. Klaver and C.I. Sánchez. "Automatic identification of reticular pseudodrusen using multimodal retinal image analysis", Investigative Ophthalmology and Visual Science 2015;56(1):633-639. Abstract/PDF DOI PMID

  15. A.E. Dijkstra, D.S. Postma, B. van Ginneken, M.O. Wielpütz, M. Schmidt, N. Becker, M. Owsijewitsch, H.-U. Kauczor, H.J. de Koning, J.W. Lammers, M. Oudkerk, C.-A. Brandsma, Y. Bossé, D.C. Nickle, D.D. Sin, P.S. Hiemstra, C. Wijmenga, J. Smolonska, P. Zanen, J.M. Vonk, M. van den Berge, H.M. Boezen and H.J.M. Groen. "Novel Genes for Airway Wall Thickness Identified with Combined Genome Wide Association and Expression Analyses", American Journal of Respiratory and Critical Care Medicine 2015;191:547-556. Abstract/PDF DOI PMID

  16. C. Jacobs, E.M. van Rikxoort, E.T. Scholten, P.A. de Jong, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Solid, Part-Solid, or Non-solid?: Classification of Pulmonary Nodules in Low-Dose Chest Computed Tomography by a Computer-Aided Diagnosis System", Investigative Radiology 2015;50:168-173. Abstract/PDF DOI PMID

  17. E.T. Scholten, P.A. de Jong, B. de Hoop, R. van Klaveren, S. van Amelsvoort-van de Vorst, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, R.M. Vernhout, H.J.M. Groen, J.-W.J. Lammers, B. van Ginneken, C. Jacobs, W.P.T.M. Mali, N. Horeweg, C. Weenink, E. Thunnissen, M. Prokop and H.A. Gietema. "Towards a close computed tomography monitoring approach for screen detected subsolid pulmonary nodules?", European Respiratory Journal 2015;45:765-773. Abstract/PDF DOI PMID

  18. F. Ciompi, C. Jacobs, E. Scholten, M. Winkler Wille, P. de Jong, M. Prokop and B. van Ginneken. "Bag of frequencies: a descriptor of pulmonary nodules in Computed Tomography images", IEEE Transactions on Medical Imaging 2015;34:1-12. Abstract/PDF DOI PMID

  19. E.T. Scholten, P.A. de Jong, C. Jacobs, B. van Ginneken, S. van Riel, M.J. Willemink, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, W.P.T.M. Mali and H.A. Gietema. "Interscan variation of semi-automated volumetry of subsolid pulmonary nodules", European Radiology 2015;25:1040-1047. Abstract/PDF DOI PMID

  20. J. Melendez, B. van Ginneken, P. Maduskar, R.H.H.M. Philipsen, K. Reither, M. Breuninger, I.M.O. Adetifa, R. Maane, H. Ayles and C.I. Sánchez. "A Novel Multiple-Instance Learning-Based Approach to Computer-Aided Detection of Tuberculosis on Chest X-Rays", IEEE Transactions on Medical Imaging 2015;34:179-192. Abstract/PDF DOI PMID

  21. E.T. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, H.J. de Koning, N. Horeweg, M. Prokop, H.A. Gietema, W.P.T.M. Mali and P.A. de Jong. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", European Radiology 2015;25:488-496. Abstract/PDF DOI PMID

  22. R.A.P. Takx, R. Vliegenthart, F.A.A. Mohamed Hoesein, I. Išgum, H.J. de Koning, W.P.T.M. Mali, C.M. van der Aalst, P. Zanen, J.-W.J. Lammers, H.J.M. Groen, E.M. van Rikxoort, M. Schmidt, B. van Ginneken, M. Oudkerk, T. Leiner and P.A. de Jong. "Pulmonary function and CT biomarkers as risk factors for cardiovascular events in male lung cancer screening participants: the NELSON study", European Radiology 2015;25:65-71. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. A.M. Mendrik, E.-j. Vonken, T. Witkamp, M. Prokop, B. van Ginneken and M.A. Viergever. "Using the Fourth Dimension to Distinguish Between Structures for Anisotropic Diffusion Filtering in 4D CT Perfusion Scans", in: Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, volume 8682 of Lecture Notes in Computer Science, 2015, pages 79-87.

  2. B. van Ginneken, A.A.A. Setio, C. Jacobs and F. Ciompi. "Off-the-shelf convolutional neural network features for pulmonary nodule detection in computed tomography scans", in: IEEE International Symposium on Biomedical Imaging, 2015, pages 286-289. Abstract/PDF DOI

  3. A.A.A. Setio, C. Jacobs, F. Ciompi, S.J. van Riel, M.M.W. Wille, A. Dirksen, E.M. van Rikxoort and B. van Ginneken. "Computer-aided detection of lung cancer: combining pulmonary nodule detection systems with a tumor risk prediction model", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI

  4. F.G. Venhuizen, B. van Ginneken, B. Bloemen, M.J.J.P. van Grinsven, R. Philipsen, C. Hoyng, T. Theelen and C.I. Sánchez. "Automated Age-Related Macular Degeneration Classification in OCT using Unsupervised Feature Learning", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI

  5. F. Ciompi, C. Jacobs, E.T. Scholten, S. van Riel, M.M.W. Wille, M. Prokop and B. van Ginneken. "Automatic detection of spiculation of pulmonary nodules in Computed Tomography images", in: Medical Imaging, volume 9414 of Proceedings of the SPIE, 2015. Abstract/PDF DOI


Abstracts

  1. F.G. Venhuizen, M.B. Breukink, B. van Ginneken, M.J.J.P. van Grinsven, B. Bloemen, C.B. Hoyng, T. Theelen, C.J.F. Boon and C.I. Sánchez. "Automated Quantification of Subretinal Fluid in Central Serous Chorioretinopathy in 3D Optical Coherence Tomography Images", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  2. S. van Riel, F. Ciompi, M.W. Wille, M. Naqibullah, E. Scholten, C. Schaefer-Prokop and B. van Ginneken. "Lung-RADS versus the McWilliams nodule malignancy score for risk prediction: an evaluation using lesions from the DLCST Trial", in: World Conference on Lung Cancer, 2015. Abstract

  3. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, A. Dirksen, K. Chung, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Comparing LungRADS and the McWilliams nodule malignancy score: which approach works best to select screen detected pulmonary nodules for more aggressive followup?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  4. S. van Riel, F. Ciompi, M.W. Wille, E. Scholten, N. Sverzellati, S. Rossi, A. Dirksen, M. Brink, R. Wittenberg, M. Naqibullah, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Can morphological features differentiate between malignant and benign pulmonary nodules, detected in a screen setting?", in: Annual Meeting of the Radiological Society of North America, 2015. Abstract

  5. F.G. Venhuizen, M.J. van Grinsven, C.B. Hoyng, T. Theelen, B. van Ginneken and C.I. Sanchez. "Vendor Independent Cyst Segmentation in Retinal SD-OCT Volumes using a Combination of Multiple Scale Convolutional Neural Networks", in: Medical Image Computing and Computer-Assisted Intervention, 2015. Abstract/PDF

  6. A. Ritchie, C. Sanghera, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tammemagi and S. Lam. "Computer Vision Tool and Technician as First Reader of Lung Cancer Screening CT", in: World Conference on Lung Cancer, 2015. Abstract

  7. A. Ritchie, M. Tammemagi, C. Jacobs, W. Zhang, J. Mayo, H. Roberts, M. Gingras, S. Pasian, L. Stewart, S. Tsai, D. Manos, J. Seely, P. Burrowes, R. Bhatia, S. Atkar-Khattra, B. van Ginneken, M. Tsao and S. Lam. "Automated measurement of malignancy risk of lung nodule detected by screening computed tomography", in: World Conference on Lung Cancer, 2015. Abstract

  8. E. Scholten, C. Jacobs, B. van Ginneken, S. van Riel, R. Vliegenthart, M. Oudkerk, M. Prokop, H. Gietema and P. de Jong.. "Detection and quantification of the solid component in pulmonary subsolid nodules by semiautomatic segmentation", in: European Congress of Radiology, 2015. Abstract/PDF

  9. P. Maduskar, I. Adetifa, J. van den Hombergh, E. Leroy-Terquem, A. Fasan-Odunsi, C.I. Sánchez, U. d'Alessandro and B. van Ginneken. "Computerized Reading of Chest Radiographs in The Gambia National Tuberculosis Prevalence Survey: Retrospective Comparison with Human Experts", in: Union World Conference on Lung Health, 2015. Abstract

  10. R.H. Philipsen, C.I. Sánchez, P. Maduskar, J. Melendez, B. van Ginneken and W. Lew. "Objective Computerized Chest Radiography Screening to Detect Tuberculosis in the Philippines", in: Union World Conference on Lung Health, 2015. Abstract

  11. S. van Riel, K. Chung, E. Scholten, P. de Jong, C. Schaefer-Prokop and B. van Ginneken. "ACR Lung-RADS guidelines for pure ground-glass nodules: is a threshold of 20mm adequate?", in: ECR, 2015. Abstract

  12. C.I. Sánchez, S. Lambertus, B. Bloemen, N. Bax, F.G. Venhuizen, M.J.J.P. van Grinsven, B. van Ginneken, T. Theelen and C. Hoyng. "Automatic quantification of geographic atrophy in fundus autofluorescence images of Stargardt patients", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  13. K. Chung, E. Scholten, S. van Riel, F. Ciompi, P. de Jong, M. Wille, M. Prokop, B. van Ginneken and C. Schaefer-Prokop. "Differentiation of persistent and transient subsolid nodules: does morphology help?", in: European Congress of Radiology, 2015. Abstract

  14. M.J.J.P. van Grinsven, F.G. Venhuizen, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic detection of eye diseases using automated color fundus image analysis", in: Association for Research in Vision and Ophthalmology, 2015. Abstract

  15. E. Pompe, P. De Jong, E. Van Rikxoort, L. Gallardo-Estrella, W. De Jong, R. Vliegenthart, M. Oudkerk, C. Van der Aalst, B. Van Ginneken, J.-W. Lammers and F. Mohamed Hoesein. "Bone density is associated with emphysema and air trapping on CT in smokers", in: American Thoracic Society International Conference, 2015. Abstract DOI


Theses

  1. B. Lassen-Schmidt. "Automatic and Interactive Segmentation of Pulmonary Lobes and Nodules in Chest CT Images", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  2. C. Jacobs. "Automatic detection and characterization of pulmonary nodules in thoracic CT images", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  3. P. Maduskar. "Automated analysis of tuberculosis in chest radiographs", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  4. J. Melendez. "Improving computer-aided detection systems through advanced pattern recognition techniques", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL

  5. S. Schalekamp. "Advanced processing in chest radiography: impact on observer performance", PhD thesis, Radboud Universiteit Nijmegen, 2015. Abstract/PDF URL


2014

Papers in international journals

  1. S. Schalekamp, B. van Ginneken, I.A.H. van den Berk, I.J.C. Hartmann, M.M. Snoeren, A.E. Odink, W. van Lankeren, S.A.H. Pegge, L.J. Schijf, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppression increases the visibility of invasive pulmonary aspergillosis in chest radiographs", PLoS One 2014;9:e108551. Abstract/PDF DOI PMID

  2. M. Breuninger, B. van Ginneken, R.H.H.M. Philipsen, F. Mhimbira, J.J. Hella, F. Lwilla, J. van den Hombergh, A. Ross, L. Jugheli, D. Wagner and K. Reither. "Diagnostic accuracy of computer-aided detection of pulmonary tuberculosis in chest radiographs: a validation study from sub-saharan Africa", PLoS One 2014;9:e106381. Abstract/PDF DOI PMID

  3. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer-aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone-suppressed images", Radiology 2014;272:252-261. Abstract/PDF DOI PMID

  4. S. Schalekamp, B. van Ginneken, C.M. Schaefer-Prokop and N. Karssemeijer. "Influence of study design in receiver operating characteristics studies: sequential versus independent reading", Journal of Medical Imaging 2014;1:015501-015501. Abstract/PDF DOI

  5. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, O.M. Mets, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Contribution of CT Quantified Emphysema, Air Trapping and Airway Wall Thickness on Pulmonary Function in Male Smokers With and Without COPD", COPD 2014;11:503-509. Abstract/PDF DOI PMID

  6. T.T.J.P. Kockelkorn, C.M. Schaefer-Prokop, G. Bozovic, A. Muñoz-Barrutia, E.M. van Rikxoort, M.S. Brown, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Interactive lung segmentation in abnormal human and animal chest CT scans", Medical Physics 2014;41:081915. Abstract/PDF DOI PMID

  7. J. Melendez, C.I. Sánchez, B. van Ginneken and N. Karssemeijer. "Improving mass candidate detection in mammograms via feature maxima propagation and local feature selection", Medical Physics 2014;41:081904. Abstract/PDF DOI PMID

  8. R.D. Rudyanto, S. Kerkstra, E.M. van Rikxoort, C. Fetita, P.-Y. Brillet, C. Lefevre, W. Xue, X. Zhu, J. Liang, I. Öksüz, D. Ãœnay, K. Kadipasaoglu, R.S.J. Estépar, J.C. Ross, G.R. Washko, J.-C. Prieto, M.H. Hoyos, M. Orkisz, H. Meine, M. Hüllebrand, C. Stöcker, F.L. Mir, V. Naranjo, E. Villanueva, M. Staring, C. Xiao, B.C. Stoel, A. Fabijanska, E. Smistad, A.C. Elster, F. Lindseth, A.H. Foruzan, R. Kiros, K. Popuri, D. Cobzas, D. Jimenez-Carretero, A. Santos, M.J. Ledesma-Carbayo, M. Helmberger, M. Urschler, M. Pienn, D.G. Bosboom, A. Campo, M. Prokop, P.A. de Jong, C.O. de Solorzano, A. Muñoz-Barrutia and B. van Ginneken. "Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study", Medical Image Analysis 2014;18:1217-1232. Abstract/PDF DOI PMID

  9. P. Maduskar, L. Hogeweg, P.A. de Jong, L. Peters-Bax, R. Dawson, H. Ayles, C.I. Sánchez and B. van Ginneken. "Cavity contour segmentation in chest radiographs using supervised learning and dynamic programming", Medical Physics 2014;41:071912-1 - 071912-15. Abstract/PDF DOI PMID

  10. M. Muyoyeta, P. Maduskar, M. Moyo, N. Kasese, D. Milimo, R. Spooner, N. Kapata, L. Hogeweg, B. van Ginneken and H. Ayles. "The Sensitivity and Specificity of Using a Computer Aided Diagnosis Program for Automatically Scoring Chest X-Rays of Presumptive TB Patients Compared with Xpert MTB/RIF in Lusaka Zambia", PLoS One 2014;9(4):e93757. Abstract/PDF DOI PMID

  11. R. van den Boom, R. Manniesing, M.T.H. Oei, W.-J. van der Woude, E.J. Smit, H.O.A. Laue, B. van Ginneken and M. Prokop. "A 4D Digital Phantom for Patient-Specific Simulation of Brain CT Perfusion Protocols", Medical Physics 2014;41:071907-1 - 071907-9. Abstract/PDF DOI PMID

  12. S. Schalekamp, B. van Ginneken, B. Heggelman, M. Imhof-Tas, I. Somers, M. Brink, M. Spee, C. Schaefer-Prokop and N. Karssemeijer. "New methods for using computer-aided detection information for the detection of lung nodules on chest radiographs", British Journal of Radiology 2014;87:20140015. Abstract/PDF DOI PMID

  13. S.E.A. Muenzing, B. van Ginneken, M.A. Viergever and J.P.W. Pluim. "DIRBoost-An algorithm for boosting deformable image registration: Application to lung CT intra-subject registration", Medical Image Analysis 2014;18:449-459. Abstract/PDF DOI PMID

  14. S. Schalekamp, B. van Ginneken, E. Koedam, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Computer aided detection improves detection of pulmonary nodules in chest radiographs beyond the support by bone suppressed images", Radiology 2014;272:252-261. Abstract/PDF DOI PMID

  15. S. Schalekamp, B. van Ginneken, N. Karssemeijer and C.M. Schaefer-Prokop. "Chest radiography: new technological developments and their applications", Seminars in Respiratory and Critical Care Medicine 2014;35:3-16. Abstract/PDF DOI PMID

  16. G. Litjens, R. Toth, W. van de Ven, C. Hoeks, S. Kerkstra, B. van Ginneken, G. Vincent, G. Guillard, N. Birbeck, J. Zhang, R. Strand, F. Malmberg, Y. Ou, C. Davatzikos, M. Kirschner, F. Jung, J. Yuan, W. Qiu, Q. Gao, P.E. Edwards, B. Maan, F. van der Heijden, S. Ghose, J. Mitra, J. Dowling, D. Barratt, H. Huisman and A. Madabhushi. "Evaluation of prostate segmentation algorithms for MRI: The PROMISE12 challenge", Medical Image Analysis 2014;18:359-373. Abstract/PDF DOI PMID

  17. C. Jacobs, E.M. van Rikxoort, T. Twellmann, E.T. Scholten, P.A. de Jong, J.M. Kuhnigk, M. Oudkerk, H.J. de Koning, M. Prokop, C. Schaefer-Prokop and B. van Ginneken. "Automatic Detection of Subsolid Pulmonary Nodules in Thoracic Computed Tomography Images", Medical Image Analysis 2014;18:374-384. Abstract/PDF DOI PMID

  18. F.A.A. Mohamed Hoesein, M. Schmidt, O.M. Mets, H.A. Gietema, J.-W.J. Lammers, P. Zanen, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, I. Išgum, M. Prokop, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Discriminating dominant computed tomography phenotypes in smokers without or with mild COPD", Respiratory Medicine 2014;108:136-143. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. S.P. Rabbani, P. Maduskar, R.H.H.M. Philipsen, L. Hogeweg and B. van Ginneken. "Effect of image variation on computer aided detection systems", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, pages 90352H-1-90352H-8. Abstract/PDF DOI

  2. J. Melendez, C.I. Sánchez, R.H.H.M. Philipsen, P. Maduskar and B. van Ginneken. "Multiple-instance learning for computer-aided detection of tuberculosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351J. Abstract/PDF DOI

  3. C. Jacobs, S.H.T. Opdam, E.M. van Rikxoort, O.M. Mets, J. Rooyackers, P.A. de Jong, M. Prokop and B. van Ginneken. "Automated detection and quantification of micronodules in thoracic CT scans to identify subjects at risk for silicosis", in: Medical Imaging, volume 9035 of Proceedings of the SPIE, 2014, page 90351I. Abstract/PDF DOI


Abstracts

  1. L. Gallardo-Estrella, E. Pompe, F.A. Mohamed Hoesein, P. De Jong, B. van Ginneken, E.M. van Rikxoort, H. de Koning, M. Oudkerk and J. Lammers. "Relationship between Lung Function Parameters and CT Measurements of Emphysema, Airways, and Tracheal Collapse in Subjects with Mild COPD", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  2. A.A.A. Setio, J. Gelderblom, C. Jacobs and B. van Ginneken. "Automatic Detection of Large Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  3. M.T.H. Oei, Manniesing, W.-J. van der Woude. Rieneke and van den Boom, B. van Ginneken, F.J.A. Meijer and M. Prokop. "One-Step-Stroke CT Imaging - Part I: Optimization of Interleaved Acquisition of Cerebral CT Perfusion and Neck CT Angiography", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  4. R. Philipsen, P. Maduskar, L. Hogeweg, J. Melendez, C.I. Sánchez and B. van Ginneken. "Robust Computer-Aided Detection of Tuberculosis in Chest Radiographs Using Energy Normalization", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  5. F. Ciompi, B. de Hoop, C. Jacobs, M. Prokop, P. a de Jong and B. van Ginneken. "Automatic Classification of Perifissural Pulmonary Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract/PDF

  6. B. van Ginneken, C. Jacobs, E.T. Scholten, M. Prokop and P.A. de Jong. "Feasibility of Rapid Reading of CT Lung Cancer Screening with Computer-Aided Detection Support", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  7. A. Khan, A. Zaidi, R. Philipsen, S. Khowaja, B. van Ginneken, A. Khan and T. Dossul. "Detection of Chest X-ray abnormalities and tuberculosis using computer-aided detection vs interpretation by radiologists and a clinical officer", in: 45th World Conference on Lung Health, 2014. Abstract

  8. B.C. Lassen, J. Kuhnigk, C. Jacobs, E.M. van Rikxoort and B. van Ginneken. "Fully Automatic Volumetric Segmentation of Pulmonary Nodules: Evaluation using the Complete LIDC/IDRI Database", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  9. M. Schmidt, E.M.V. Rikxoort, J. Kuhnigk, P.F. Judy and B. van Ginneken. "Subvoxel Accurate Airway Wall Measurements using an Intensity Integration Approach: Comparative Study using the COPDGene Phantom", in: Annual Meeting of the Radiological Society of North America, 2014. Abstract

  10. A. Steiner, F. Mhimbira, J. van den Hombergh, P. Clowes, C. Mangu, B. van Ginneken, M. Hoelscher and K. Reither. "Computer-aided diagnosis of X-rays in a screening for pulmonary tuberculosis of a prison population in Tanzania", in: 45th World Conference on Lung Health, 2014. Abstract

  11. A. Zaidi, N. Khalid, R. Philipsen, B. van Ginneken, S. Khowaja and A. Khan. "Symptomatic screening and computer-aided radiography for active-case finding of tuberculosis: a prediction model for TB case detection", in: 45th World Conference on Lung Health, 2014. Abstract

  12. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. "Double reading improves detection of small lung tumors in chest radiographs: can a computer aided detection system replace the second reader?", in: European Congress of Radiology, 2014. Abstract

  13. M.J.J.P. van Grinsven, G.H.S. Buitendijk, C. Brussee, B. van Ginneken, T. Theelen, C.C.W. Klaver and C.I. Sánchez. "Automatic detection of reticular drusen using multimodal retinal image analysis", in: Association for Research in Vision and Ophthalmology, 2014. Abstract


Theses

  1. S.E.A. Muenzing. "Learning-based approaches to deformable image registration", PhD thesis, Utrecht University, 2014. Abstract/PDF URL


2013

Papers in international journals

  1. S. Schalekamp, B. van Ginneken, L. Meiss, L. Peters-Bax, L.G.B.A. Quekel, M.M. Snoeren, A.M. Tiehuis, R. Wittenberg, N. Karssemeijer and C.M. Schaefer-Prokop. "Bone suppressed images improve radiologists' detection performance for pulmonary nodules in chest radiographs", European Journal of Radiology 2013;82:2399-2405. Abstract/PDF DOI PMID

  2. E.T. Scholten, B. de Hoop, C. Jacobs, S. van Amelsvoort-van de Vorst, R.J. van Klaveren, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, W.T.M. Mali, H.A. Gietema, M. Prokop, B. van Ginneken and P.A. de Jong. "Semi-automatic quantification of subsolid pulmonary nodules: comparison with manual measurements", PLoS One 2013;8:e80249. Abstract/PDF DOI PMID

  3. P. Maduskar, M. Muyoyeta, H. Ayles, L. Hogeweg, L. Peters-Bax and B. van Ginneken. "Detection of tuberculosis with digital chest radiography: automatic reading versus interpretation by clinical officers", International Journal of Tuberculosis and Lung Disease 2013;17:1613-1620. Abstract/PDF DOI PMID

  4. L. Hogeweg, C.I. Sánchez and B. van Ginneken. "Suppression of translucent elongated structures: applications in chest radiography", IEEE Transactions on Medical Imaging 2013;32:2099-2113. Abstract/PDF DOI PMID

  5. E.T. Scholten, C. Jacobs, B. van Ginneken, M.J. Willemink, J.-M. Kuhnigk, P.M.A. van Ooijen, M. Oudkerk, W.P.T.M. Mali and P.A. de Jong. "Computer-Aided Segmentation and Volumetry of Artificial Ground-Glass Nodules at Chest CT", American Journal of Roentgenology 2013;201:295-300. Abstract/PDF DOI PMID

  6. E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of pulmonary structures in thoracic computed tomography scans: a review", Physics in Medicine and Biology 2013;58:R187-R220. Abstract/PDF DOI PMID

  7. E.J. Smit, E.-J. Vonken, T. van Seeters, J.W. Dankbaar, I.C. van der Schaaf, L.J. Kappelle, B. van Ginneken, B.K. Velthuis and M. Prokop. "Timing-Invariant Imaging of Collateral Vessels in Acute Ischemic Stroke", Stroke 2013;44:2194-2199. Abstract/PDF DOI PMID

  8. O.M. Mets, M. Schmidt, C.F. Buckens, M.J. Gondrie, I. Išgum, M. Oudkerk, R. Vliegenthart, H.J. de Koning, C.M. van der Aalst, M. Prokop, J.J. Lammers, P. Zanen, F.A.A. Mohamed Hoesein, W.P. Mali, B. van Ginneken, E.M. van Rikxoort and P.A. de Jong. "Diagnosis of chronic obstructive pulmonary disease in lung cancer screening Computed Tomography scans: independent contribution of emphysema, air trapping and bronchial wall thickening", Respiratory Research 2013;14:59. Abstract/PDF DOI PMID

  9. L. Hogeweg, C.I. Sánchez, J. Melendez, P. Maduskar, A. Story, A. Hayward and B. van Ginneken. "Foreign object detection and removal to improve automated analysis of chest radiographs", Medical Physics 2013;40:071901. Abstract/PDF DOI PMID

  10. F.A.A. Mohamed Hoesein, P. Zanen, P.A. de Jong, B. van Ginneken, H.M. Boezen, H.J. Groen, M. Oudkerk, H.J. de Koning, D.S. Postma and J.-W.J. Lammers. "Rate of progression of CT-quantified emphysema in male current and ex-smokers: a follow-up study", Respiratory Research 2013;14:55. Abstract/PDF DOI PMID

  11. F.A.A. Mohamed Hoesein, P.A. de Jong, J.-W.J. Lammers, W.P.T.M. Mali, M. Schmidt, H.J. de Koning, C. van der Aalst, M. Oudkerk, R. Vliegenthart, B. van Ginneken, E.M. van Rikxoort and P. Zanen. "Computed tomography structural lung changes in discordant airflow obstruction", PLoS One 2013;8:e65177. Abstract/PDF DOI PMID

  12. O.M. Mets, P.A. de Jong, B. van Ginneken, C.L.J.J. Kruitwagen, M. Prokop, M. Oudkerk, J.-W.J. Lammers and P. Zanen. "CT Air Trapping Is Independently Associated with Lung Function Reduction over Time", PLoS One 2013;8:e61783. Abstract/PDF DOI PMID

  13. E.T. Scholten, W.P.T.M. Mali, M. Prokop, B. van Ginneken, R. Glandorf, R. van Klaveren, M. Oudkerk and P.A. de Jong. "Non-solid lung nodules on low-dose computed tomography: comparison of detection rate between 3 visualization techniques", Cancer Imaging 2013;13:150-154. Abstract/PDF DOI PMID

  14. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic Drusen Quantification and Risk Assessment of Age-related Macular Degeneration on Color Fundus Images", Investigative Ophthalmology and Visual Science 2013;54(4):3019-3027. Abstract/PDF DOI PMID

  15. N. Fens, A.G.J. van Rossum, P. Zanen, B. van Ginneken, R.J. van Klaveren, A.H. Zwinderman and P.J. Sterk. "Subphenotypes of Mild-to-Moderate COPD by Factor and Cluster Analysis of Pulmonary Function, CT Imaging and Breathomics in a Population-Based Survey", COPD 2013;10:277-285. Abstract/PDF DOI PMID

  16. A.E. Dijkstra, D.S. Postma, N. Ten Hacken, J.M. Vonk, M. Oudkerk, P.M. van Ooijen, P. Zanen, F.A.A. Mohamed Hoesein, B. van Ginneken, M. Schmidt and H.J. Groen. "Low-dose CT measurements of airway dimensions and emphysema associated with airflow limitation in heavy smokers: a cross sectional study", Respiratory Research 2013;14:1-9. Abstract/PDF DOI PMID

  17. B. Lassen, E.M. van Rikxoort, M. Schmidt, S. Kerkstra, B. van Ginneken and J. Kuhnigk. "Automatic segmentation of the pulmonary lobes from chest CT scans based on fissures, vessels, and bronchi", IEEE Transactions on Medical Imaging 2013;32:210-222. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, J. Grutters, R. Ramos and A. Campilho. "Learning Interstitial Lung Diseases CT Patterns from Reports Keywords", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 21-32. Abstract/PDF

  2. B. van Ginneken, R.H.H.M. Philipsen, L. Hogeweg, P. Maduskar, J.C. Melendez, C.I. Sánchez, R. Maane, B. dei Alorse, U. d'Alessandro and I.M.O. Adetifa. "Automated Scoring of Chest Radiographs for Tuberculosis Prevalence Surveys: A Combined Approach", in: The Fifth International Workshop on Pulmonary Image Analysis, 2013, pages 9-19. Abstract/PDF

  3. M.J.J.P. van Grinsven, A. Chakravarty, J. Sivaswamy, T. Theelen, B. van Ginneken and C.I. Sánchez. "A bag of words approach for discriminating between retinal images containing exudates or drusen", in: IEEE International Symposium on Biomedical Imaging, 2013, pages 1444-1447. Abstract/PDF DOI

  4. R. Philipsen, P. Maduskar, L. Hogeweg and B. van Ginneken. "Normalization of Chest Radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700G. Abstract/PDF DOI

  5. A. van der Avoird, N. Lin, B. van Ginneken and R. Manniesing. "A Hardware Implementation of a Levelset Algorithm for Carotid Lumen Segmentation in CTA", in: Medical Imaging of Proceedings of the SPIE, 2013. Abstract/PDF DOI

  6. P. Maduskar, L. Hogeweg, R. Philipsen and B. van Ginneken. "Automated localization of costophrenic recesses and costophrenic angle measurement on frontal chest radiographs", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 867038. Abstract/PDF DOI

  7. J.J. Mordang, M.T.H. Oei, R. van den Boom, E.J. Smit, M. Prokop, B. van Ginneken and R. Manniesing. "A Pattern Recognition Framework for Vessel Segmentation in 4D CT of the Brain", in: Medical Imaging of Proceedings of the SPIE, 2013, page 866919. Abstract/PDF DOI

  8. M.J.J.P. van Grinsven, Y.T.E. Lechanteur, J.P.H. van de Ven, B. van Ginneken, T. Theelen and C.I. Sánchez. "Automatic Age-related macular degeneration detection and staging", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700M. Abstract/PDF DOI

  9. P. Maduskar, L. Hogeweg, R. Philipsen, S. Schalekamp and B. van Ginneken. "Improved texture analysis for automatic detection of Tuberculosis (TB) on Chest Radiographs with Bone Suppression images", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700H. Abstract/PDF DOI

  10. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. "Impact of Bone Suppression Imaging on the Detection of Lung Nodules in Chest Radiographs: Analysis of Multiple Reading Sessions", in: Medical Imaging of Proceedings of the SPIE, 2013, page 86730Y. Abstract/PDF DOI

  11. L. Gallardo-Estrella, B. van Ginneken and E.M. van Rikxoort. "Normalization of CT scans reconstructed with different kernels to reduce variability in emphysema measurements", in: Medical Imaging, volume 8670 of Proceedings of the SPIE, 2013, page 86700E. Abstract/PDF DOI


Abstracts

  1. S. Schalekamp, B. van Ginneken, M. Brink, B. Heggelman, M. Spee, I. Somers, N. Karssemeijer and C. Schaefer-Prokop. ""Computer Aided Detection shows added value to Bone Suppression Imaging for the detection of lung nodules in chest radiographs"", in: WCTI, 2013. Abstract

  2. S. Schalekamp, B. van Ginneken, C. Schaefer-Prokop and N. Karssemeijer. ""Computer aided detection of lung nodules in chest radiographs: novel approaches to improve reader performance"", in: MIPS, 2013. Abstract

  3. S. Schalekamp, N. Karssemeijer, C. Schaefer-Prokop and B. van Ginneken. ""Independent combination of multiple readers for the detection of lung nodules in chest radiographs: setting a benchmark for computer-aided detection"", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  4. B. van Ginneken, E.M. van Rikxoort, S.J. Lafebre, C. Jacobs, M. Schmidt, J.-M. Kuhnigk, M. Prokop, C.M. Schaefer-Prokop, J. Charbonnier, L. Hogeweg, P. Maduskar, L. Gallardo-Estrella, R. Philipsen and B. Lassen. "CIRRUS Lung: an optimized workflow for quantitative image analysis of thoracic computed tomography and chest radiography for major pulmonary diseases: chronic obstructive pulmonary disease, lung cancer and tuberculosis", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  5. C. Jacobs, B. van Ginneken, S. Fromme, M. Prokop and E.M. van Rikxoort. "Benchmarking computer-aided detection of pulmonary nodules on the recently completed publicly available LIDC/IDRI database", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  6. S.J. van Riel, E.M. van Rikxoort, C. Jacobs, S. Schalekamp, M. Prokop, B. van Ginneken, P.A. de Jong, E.T. Scholten, H.A. Gietema and C.M. Schaefer-Prokop. "Intra- and inter-reader variability of pulmonary nodule classification according to the Fleischner guidelines: clinical consequences", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  7. S.J. van Riel, C.M. Schaefer-Prokop, E.M. van Rikxoort, B. van Ginneken, M. Prokop, S. Schalekamp, C. Jacobs, P.A. de Jong, H.A. Gietema and E.T. Scholten. "Impact of section thickness on classification of pulmonary nodules into solid, part-solid, and non-solid: an observer study", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  8. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J.-M. Kuhnigk, M. Oudkerk, H. de Koning and B. van Ginneken. "Reproducibility of automated three-dimensional airway wall thickness measurements in thoracic computed tomography and influence of inspiration depth", in: Annual Meeting of the Radiological Society of North America, 2013. Abstract

  9. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Automated characterization of pulmonary nodules in thoracic CT images using a segmentation-based classification system", in: European Congress of Radiology, 2013. Abstract

  10. C. Jacobs, E.M. van Rikxoort, J.-M. Kuhnigk, E.T. Scholten, P.A. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Non-solid, part-solid or solid? Classification of pulmonary nodules in thoracic CT by radiologists and a computer-aided diagnosis system", in: European Congress of Radiology, 2013. Abstract

  11. P. Maduskar, L. Hogeweg, H. Ayles and B. van Ginneken. "Performance evaluation of automatic chest radiograph reading for detection of tuberculosis (TB): a comparative study with clinical officers and certified readers on TB suspects in sub-Saharan Africa", in: European Congress of Radiology, 2013. Abstract

  12. M.T.H. Oei, R. van den Boom, L.J. Oostveen, H.O.A. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Influence of Temporal Sampling Rate of CTP acquisitions on Cerebral Perfusion Maps using a Digital Phantom", in: European Congress of Radiology, 2013. Abstract

  13. R. van den Boom, M. Oei, L. Oostveen, H. Laue, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of dose reduction on cerebral CT perfusion maps: results from a hybrid digital perfusion phantom", in: European Congress of Radiology, 2013. Abstract


Theses

  1. L.E. Hogeweg. "Automatic detection of tuberculosis in chest radiographs", PhD thesis, Radboud Universiteit Nijmegen, 2013. Abstract/PDF URL


2012

Papers in international journals

  1. O.M. Mets, P. Zanen, J.-W.J. Lammers, I. Išgum, H.A. Gietema, B. van Ginneken, M. Prokop and P.A. de Jong. "Early Identification of Small Airways Disease on Lung Cancer Screening CT: Comparison of Current Air Trapping Measures", Lung 2012;190:629-633. Abstract/PDF DOI PMID

  2. I. Išgum, M. Prokop, M. Niemeijer, M. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose chest computed tomography", IEEE Transactions on Medical Imaging 2012;31:2322 - 2334. Abstract/PDF DOI PMID

  3. B. de Hoop, B. van Ginneken, H. Gietema and M. Prokop. "Pulmonary Perifissural Nodules on CT Scans: Rapid Growth Is Not a Predictor of Malignancy", Radiology 2012;265:611-616. Abstract/PDF DOI PMID

  4. S.E.A. Muenzing, B. van Ginneken, K. Murphy and J.P.W. Pluim. "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis 2012;16:1521-1531. Abstract/PDF DOI PMID

  5. O.M. Mets, R.A. van Hulst, C. Jacobs, B. van Ginneken and P.A. de Jong. "Normal Range of Emphysema and Air Trapping on CT in Young Men", American Journal of Roentgenology 2012;199:336-340. Abstract/PDF DOI PMID

  6. E.J. Smit, E.-J. Vonken, I.C. van der Schaaf, A. Mendrik, J.W. Dankbaar, A.D. Horsch, T. van Seeters, B. van Ginneken and M. Prokop. "Timing-Invariant Reconstruction for Deriving High-quality CT Angiographic Data from Cerebral CT Perfusion Data", Radiology 2012;263:216-225. Abstract/PDF DOI PMID

  7. P. Lo, B. van Ginneken, J.M. Reinhardt, Y. Tarunashree, P.A. de Jong, B. Irving, C. Fetita, M. Ortner, R. Pinho, J. Sijbers, M. Feuerstein, A. Fabijanska, C. Bauer, R. Beichel, C.S. Mendoza, R. Wiemker, J. Lee, A.P. Reeves, S. Born, O. Weinheimer, E.M. van Rikxoort, J. Tschirren, K. Mori, B. Odry, D.P. Naidich, I.J. Hartmann, E.A. Hoffman, M. Prokop, J.H. Pedersen and M. de Bruijne. "Extraction of Airways from CT (EXACT'09)", IEEE Transactions on Medical Imaging 2012;31:2093-2107. Abstract/PDF DOI PMID

  8. L. Hogeweg, C.I. Sánchez, P.A. de Jong, P. Maduskar and B. van Ginneken. "Clavicle segmentation in chest radiographs", Medical Image Analysis 2012;16:1490 - 1502. Abstract/PDF DOI PMID

  9. F.A.A. Mohamed Hoesein, P. Zanen, H.M. Boezen, H.J.M. Groen, B. van Ginneken, P.A. de Jong, D.S. Postma and J.-W.J. Lammers. "Lung function decline in heavy male smokers relates to baseline airflow obstruction severity", Chest 2012;142:1530-1538. Abstract/PDF DOI PMID

  10. A.M. Mendrik, E.P.A. Vonken, G.A.P. de Kort, B. van Ginneken, E.J. Smit, M.A. Viergever and M. Prokop. "Improved Arterial Visualization in Cerebral CT Perfusion-Derived Arteriograms Compared with Standard CT Angiography: A Visual Assessment Study", American Journal of Neuroradiology 2012;33:2171-2177. Abstract/PDF DOI PMID

  11. K. Murphy, J.P.W. Pluim, E.M. van Rikxoort, P.A. de Jong, B. de Hoop, H.A. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken. "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics 2012;39:1650-1662. Abstract/PDF DOI PMID

  12. P.C. Jacobs, M.J.A. Gondrie, Y. van der Graaf, H.J. de Koning, I. Išgum, B. van Ginneken and W.P.T.M. Mali. "Coronary Artery Calcium Can Predict All-Cause Mortality and Cardiovascular Events on Low-Dose CT Screening for Lung Cancer", American Journal of Roentgenology 2012;198:505-511. Abstract/PDF DOI PMID

  13. F.A.A. Mohamed Hoesein, E.M. van Rikxoort, B. van Ginneken, P.A. de Jong, M. Prokop, J.-W.J. Lammers and P. Zanen. "CT-quantified emphysema distribution is associated with lung function decline", European Respiratory Journal 2012;40:844-850. Abstract/PDF DOI PMID

  14. O.M. Mets, P.A. de Jong, B. van Ginneken, H.A. Gietema and J.W.J. Lammers. "Quantitative Computed Tomography in COPD: Possibilities and Limitations", Lung 2012;190:133-145. Abstract/PDF DOI PMID

  15. O.M. Mets, K. Murphy, P. Zanen, H.A. Gietema, J.W. Lammers, B. van Ginneken, M. Prokop and P.A. de Jong. "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology 2012;22:120-128. Abstract/PDF DOI PMID

  16. E.M. van Rikxoort, J. Goldin, F. Abtin, H.J. Kim, P. Lu, B. van Ginneken, G. Shaw, M. Galperin-Aizenberg and M.S. Brown. "A method for the automatic quantification of the completeness of pulmonary fissures: evaluation in a database of subjects with severe emphysema", European Radiology 2012;22:302-309. Abstract/PDF DOI PMID

  17. C.I. Sánchez, M. Niemeijer, I. Išgum, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Contextual computer-aided detection: Improving bright lesion detection in retinal images and coronary calcification identification in CT scans", Medical Image Analysis 2012;16(1):50-62. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. T.T.J.P. Kockelkorn, R. Ramos, J. Ramos, C.I. Sánchez, P.A. de Jong, C. Schaefer-Prokop, J.C. Grutters, B. van Ginneken and M.A. Viergever. "Interactive classification of lung tissue in CT scans by combining prior and interactively obtained training data: a simulation study", in: International Conference on Pattern Recognition, 2012, pages 105-108. Abstract/PDF

  2. S. Muenzing, B. van Ginneken and J.P.W. Pluim. "DIRBoost: An algorithm for boosting deformable image registration", in: IEEE International Symposium on Biomedical Imaging, 2012, pages 1339-1342. Abstract/PDF DOI

  3. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "On Combining Algorithms for Deformable Image Registration", in: Biomedical Image Registration of Lecture Notes in Computer Science, 2012, pages 256-265. Abstract/PDF DOI

  4. J. Ramos, T. Kockelkorn, B. van Ginneken, M.A. Viergever, R. Ramos and A. Campilho. "Supervised Content Based Image Retrieval Using Radiology Reports", in: Image Analysis and Recognition, volume 7325 of Lecture Notes in Computer Science, 2012, pages 249-258. Abstract/PDF DOI

  5. J. Melendez, C.I. Sánchez, R. Hupse, B. van Ginneken and N. Karssemeijer. "Potential of a Standalone Computer-Aided Detection System for Breast Cancer Detection in Screening Mammography", in: IWDM '12: Proceedings of the 11th International Workshop on Breast Imaging, volume 7361 of Lecture Notes in Computer Science, 2012, pages 682-689. Abstract/PDF DOI

  6. R. van den Boom, M. Oei, S. Lafebre, L. Oostveen, A. Meijer, S. Steens, M. Prokop, B. van Ginneken and R. Manniesing. "Brain Tissue Segmentation in 4D CT Images Using Voxel Classification", in: Medical Imaging, volume 8314 of Proceedings of the SPIE, 2012, pages 83144B-83144B-6. Abstract/PDF DOI

  7. E.M. van Rikxoort, P.A. de Jong, O.M. Mets and B. van Ginneken. "Automatic classication of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Medical Imaging, volume 8315 of Proceedings of the SPIE, 2012, pages 83150P-83150P-6. Abstract/PDF DOI


Abstracts

  1. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Botsuppressie in thoraxfoto's verbetert de detectie van pulmonale nodules door radiologen", in: Radiologen Dagen, 2012. Abstract

  2. B.C. Lassen, M. Schmidt, E.M. van Rikxoort, B. van Ginneken, C. Jacobs, J. Kuhnigk and M. Prokop. "Automated and interactive image analysis workstation for the extraction of imaging biomarkers related to chronic obstructive pulmonary disease from thoracic computed tomography scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  3. C. Jacobs, J. Kuhnigk, E.M. van Rikxoort, T. Twellmann, P. de Jong, H. Gietema, B. Lassen, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Optimized workflow for low dose thoracic CT lung cancer screening: automated detection, measurement, temporal matching and volumetry and mass analysis, individualized prediction of cancer risk, structured reporting with follow-up recommendation", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  4. J. Melendez, C.I. Sánchez, B. van Ginneken and N. Karssemeijer. "Detection of breast carcinomas potentially missed during screening by means of a standalone CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  5. A. Nair, Desai, S. R, C.S.J., A.J. Edey, S.L.F. Walsh, G. Robinson, J.K. Field, D.R. Baldwin, R. Vliegenthart, M. Oudkerk, B. van Ginneken, P.A. de Jong, M. Prokop, D.M. Hansell and A. Devaraj. "The impact of numbers of readers and methods of arbitration on pulmonary nodule detection in the context of lung cancer screening with CT", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  6. B. van Ginneken, L. Hogeweg, P. Maduskar, L. Peters-Bax, R. Dawson, K. Dheda, H. Ayles, J. Melendez and C.I. Sánchez. "Performance of inexperienced and experienced observers in detection of active tuberculosis on digital chest radiographs with and without the use of computer-aided diagnosis", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  7. E.J. Smit, E. Vonken, F.J. Meijer, J. Dankbaar, A. Horsch, B. van Ginneken, B. Velthuis, I. van der Schaaf and M. Prokop. "Acute Ischemic Stroke Assessment on CT-Angiography That Derived from CT-Perfusion Images", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  8. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, M. Snoeren, L. Quekel, E. Koedam, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  9. S. Schalekamp, B. van Ginneken, L. Bax, M. Imhof-Tas, L. Meiss, A. Tiehuis, N. Karssemeijer and C. Schaefer-Prokop. "Bone suppression imaging improves observer performance for the detection of lung nodules in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  10. S. Schalekamp, B. van Ginneken, E. Koedam, L. Quekel, M. Snoeren, R. Wittenberg, N. Karssemeijer and C. Schaefer-Prokop. "Computer aided detection helps radiologists to detect pulmonary nodules in chest radiographs, when having bone suppressed images available", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  11. L. Gallardo-Estrella, B. van Ginneken, O.M. Mets, P. Zanen, P.A. de Jong, C.M. Schaefer-Prokop and E.M. van Rikxoort. "Trachea Shape Analysis from Inspiration and Expiration Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  12. B. Lassen, E.M. van Rikxoort, J. Kuhnigk and B. van Ginneken. "Fast and Intuitive Interactive Lung Lobe Segmentation in Thoracic Computed Tomography Scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  13. E.M. van Rikxoort, B. van Ginneken, M. Schmidt, A. Lahaije, H. van Helvoort, M. Prokop and Y. Heijdra. "Dynamic Hyperinflation in COPD Patients: Is It Related to Emphysema and Airway Morphology in Inspiration and Expiration Thoracic CT?", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  14. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, J. Kuhnigk and B. van Ginneken. "Automatic Quantification of Airway Dimensions in COPD: Processing Large Databases of Chest CT scans", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  15. M. Schmidt, E.M. van Rikxoort, O.M. Mets, P.A. de Jong, P. Zanen, J. Kuhnigk and B. van Ginneken. "Relating Automatic Quantification of Airway Wall Thickness, Emphysema and Air Trapping in Inspiration and Expiration Chest CT Scans to COPD GOLD Stages", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  16. C. Jacobs, E.M. van Rikxoort, T. Twellmann, P. de Jong, C. Schaefer-Prokop, M. Prokop and B. van Ginneken. "Improved computer-aided detection of pulmonary nodules by combining a solid and subsolid nodule CAD system", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  17. J.J. Mordang, M.T.H. Oei, R. van den Boom, H.O.A. Laue, L.J. Oostveen, M. Prokop, B. van Ginneken and R. Manniesing. "Effect of Dose Reduction in CT Perfusion Scans on Cerebral Blood Flow and Volume Computed with Three Perfusion Software Packages: Analysis with a Digital Phantom", in: Annual Meeting of the Radiological Society of North America, 2012. Abstract

  18. L. Gallardo-Estrella, P.A. de Jong, O.M. Mets, B. van Ginneken and E.M. van Rikxoort. "Automatic classification of pulmonary function in COPD patients using trachea analysis in chest CT scans", in: Annual Meeting of the European Society of Thoracic Imaging, 2012. Abstract

  19. M.J.J.P. van Grinsven, B. van Ginneken and C.I. Sánchez. "Web-based workstation for the analysis of color fundus images", in: ISBI Medical Image Analysis Workshop, 2012. Abstract

  20. M.J.J.P. van Grinsven, J.P.H. van de Ven, Y.T.E. Lechanteur, B. van Ginneken, C.B. Hoyng, T. Theelen and C.I. Sánchez. "Automatic Drusen Detection and Quantification for Diagnosis of Age-Related Macular Degeneration", in: Association for Research in Vision and Ophthalmology, 2012. Abstract

  21. M.T.H. Oei, R. van den Boom, L.J. Oostveen, S. Lafebre, E.J. Smit, B. van Ginneken, R. Manniesing and M. Prokop. "Hybrid digital phantom for optimizing data acquisition strategies in CT perfusion", in: European Congress of Radiology, 2012. Abstract

  22. R. van den Boom, M. Oei, L. Oostveen, S. Lafebre, B. van Ginneken, R. Manniesing and M. Prokop. "Effect of radiation exposure on quantitative evaluation of cerebral CT perfusion maps: results from a hybrid digital phantom", in: European Congress of Radiology, 2012. Abstract

  23. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Lung Cancer Screening: Retrospective Evaluation of Potential Benefit", in: European Congress of Radiology, 2012. Abstract


2011

Papers in international journals

  1. B. van Ginneken, C.M. Schaefer-Prokop and M. Prokop. "Computer-aided Diagnosis: how to Move from the Laboratory to the Clinic", Radiology 2011;261(3):719-732. Abstract/PDF DOI PMID

  2. O.M. Mets, C.F.M. Buckens, P. Zanen, I. Išgum, B. van Ginneken, M. Prokop, H.A. Gietema, J.W.J. Lammers, R. Vliegenthart, M. Oudkerk, R.J. van Klaveren, H.J. de Koning, W.P.T.M. Mali and P.A. de Jong. "Identification of Chronic Obstructive Pulmonary Disease in Lung Cancer Screening Computed Tomographic Scans", Journal of the American Medical Association 2011;306:1775-1781. Abstract/PDF DOI PMID

  3. M. Niemeijer, X. Xu, A. Dumitrescu, P. Gupta, B. van Ginneken, J. Folk and M. Abràmoff. "Automated measurement of the arteriolar-to-venular width ratio in digital color fundus photographs", IEEE Transactions on Medical Imaging 2011;31:1941-1950. Abstract/PDF DOI PMID

  4. A.M. Mendrik, E. Vonken, B. van Ginneken, H.W. de Jong, A. Riordan, T. van Seeters, E.J. Smit, M.A. Viergever and M. Prokop. "TIPS bilateral noise reduction in 4D CT perfusion scans produces high-quality cerebral blood flow maps", Physics in Medicine and Biology 2011;56:3857-3872. Abstract/PDF DOI PMID

  5. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G.E. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M.P. Heinrich, J.A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J.R. McClelland, S. Ourselin, S.E.A. Muenzing, M.A. Viergever, D.D. Nigris, D.L. Collins, T. Arbel, M. Peroni, R. Li, G.C. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J.C. Gee, M. Staring, S. Klein, B.C. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J.P.W. Pluim. "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging 2011;31:1901-1920. Abstract/PDF DOI PMID

  6. F.A.A. Mohamed Hoesein, P. Zanen, B. van Ginneken, R.J. van Klaveren and J.-W.J. Lammers. "Association of the transfer coefficient of the lung for carbon monoxide with emphysema progression in male smokers", European Respiratory Journal 2011;38:1012-1018. Abstract/PDF DOI PMID

  7. C.I. Sánchez, M. Niemeijer, A.V. Dumitrescu, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Evaluation of a Computer-Aided Diagnosis system for Diabetic Retinopathy screening on public data", Investigative Ophthalmology and Visual Science 2011;52:4866-4871. Abstract/PDF DOI PMID

  8. M. Niemeijer, M. Loog, M.D. Abràmoff, M.A. Viergever, M. Prokop and B. van Ginneken. "On Combining Computer-Aided Detection Systems", IEEE Transactions on Medical Imaging 2011;30:215-223. Abstract/PDF DOI PMID

  9. F.A.A. Mohamed Hoesein, B. de Hoop, P. Zanen, H. Gietema, C.L.J.J. Kruitwagen, B. van Ginneken, I. Išgum, C. Mol, R.J. van Klaveren, A.E. Dijkstra, H.J.M. Groen, H.M. Boezen, D.S. Postma, M. Prokop and J.-W.J. Lammers. "CT-quantified emphysema in male heavy smokers: association with lung function decline", Thorax 2011;66:782-787. Abstract/PDF DOI PMID

  10. P.A. de Jong, J.A. Achterberg, O.A.M. Kessels, B. van Ginneken, L. Hogeweg, F.J. Beek and S.W.J. Terheggen-Lagro. "Modified Chrispin-Norman chest radiography score for cystic fibrosis: observer agreement and correlation with lung function", European Radiology 2011;21:722-729. Abstract/PDF DOI PMID

  11. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B.J. de Hoop, M.A. Viergever and J.P.W. Pluim. "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis 2011;15:71-84. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. E.M. van Rikxoort and B. van Ginneken. "Automatic segmentation of the lungs and lobes from thoracic CT scans", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011, pages 261-268. Abstract

  2. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong, N. Karssemeijer and B. van Ginneken. "Cavity segmentation in chest radiographs", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011. Abstract/PDF

  3. C. Jacobs, K. Murphy, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", in: The Fourth International Workshop on Pulmonary Image Analysis, 2011. Abstract/PDF

  4. C. Jacobs, C.I. Sánchez, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT images using Shape, Intensity and Context Features", in: Medical Image Computing and Computer-Assisted Intervention, volume 6893 of Lecture Notes in Computer Science, 2011, pages 207-214. Abstract/PDF DOI PMID

  5. M. Niemeijer, A.V. Dumitrescu, B. van Ginneken and M.D. Abràmoff. "Automatic localization of bifurcations and vessel crossings in digital fundus photographs using location regression", in: Medical Imaging, volume 7965 of Proceedings of the SPIE, 2011, page 796507. Abstract/PDF DOI

  6. M. Samulski, P. Snoeren, B. Platel, B. van Ginneken, L. Hogeweg, C. Schaefer-Prokop and N. Karssemeijer. "Computer-Aided Detection as a Decision Assistant in Chest Radiography", in: Medical Imaging, volume 7966 of Proceedings of the SPIE, 2011, pages 796614-1-796614-6. Abstract/PDF


Abstracts

  1. I. Išgum, P.A. de Jong, W. Mali, B. van Ginneken, M. Prokop and M.A. Viergever. "Automatic Coronary Calcium Scoring in Low-Dose Non-ECG-synchronized Chest Computed Tomography (CT) Scans from a Lung Cancer Screening Trial", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  2. L. Hogeweg, A. Story, A. Hayward, R. Aldridge, I. Abubakar, P. Maduskar and B. van Ginneken. "Computer-aided detection of tuberculosis among high risk groups: potential for automated triage", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  3. P. Maduskar, L. Hogeweg, H. Ayles, R. Dawson, P.A. de Jong and B. van Ginneken. "Automatic Size Measurement of Cavities on Chest Radiographs Using Supervised Learning and Dynamic Programming", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract

  4. C. Jacobs, E.T. Scholten, S.C. Saur, T. Twellmann, P.A. de Jong and B. van Ginneken. "Computer-Aided Detection of Ground Glass Nodules in Thoracic CT Images", in: Annual Meeting of the Radiological Society of North America, 2011. Abstract


Theses

  1. K. Murphy. "Development and evaluation of automated image analysis techniques in thoracic CT", PhD thesis, Utrecht University, The Netherlands, 2011. Abstract/PDF URL


Other publications

  1. R. Beichel, M. de Bruijne, B. van Ginneken, S. Kabus, A. Kiraly, J.M. Kuhnigk, J. McClelland, K. Mori, E.M. van Rikxoort and S. Rit. "The Fourth International Workshop on Pulmonary Image Analysis", 2011. Abstract/PDF URL


2010

Papers in international journals

  1. B. de Hoop, D.W. de Boo, H.A. Gietema, F. van Hoorn, B. Mearadji, L. Schijf, B. van Ginneken, M. Prokop and C. Schaefer-Prokop. "Computer-aided Detection of Lung Cancer on Chest Radiographs: Effect on Observer Performance", Radiology 2010;257:532-540. Abstract/PDF DOI PMID

  2. B. van Ginneken, S.G. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A.M.R. Schilham, A. Retico, M.E. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F.D. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S.C. Cheran, E.L. Torres and M. Prokop. "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis 2010;14:707-722. Abstract/PDF DOI PMID

  3. A. Mendrik, E. Vonken, B. van Ginneken, E.J. Smit, A. Waaijer, G. Bertolini, M.A. Viergever and M. Prokop. "Automatic segmentation of intracranial arteries and veins in four-dimensional cerebral CT perfusion scans", Medical Physics 2010;37:2956-2966. Abstract/PDF DOI PMID

  4. H.A. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W.J. Lammers. "Reply to Hochheggar et al", Respiratory Medicine 2010;104:1074. PDF DOI

  5. E.M. van Rikxoort, M. Prokop, B. de Hoop, M. Viergever, J. Pluim and B. van Ginneken. "Automatic Segmentation of Pulmonary Lobes Robust Against Incomplete Fissures", IEEE Transactions on Medical Imaging 2010;29:1286-1296. Abstract/PDF DOI PMID

  6. P.C.A. Jacobs, I. Išgum, M.J.A. Gondrie, W.P.T.M. Mali, B. van Ginneken, M. Prokop and Y. der Graaf. "Coronary artery calcification scoring in low-dose ungated CT screening for lung cancer: interscan agreement", American Journal of Roentgenology 2010;194:1244-1249. Abstract/PDF DOI PMID

  7. P.C. Jacobs, M. Prokop, Y. van der Graaf, M.J. Gondrie, K.J. Janssen, H.J. de Koning, I. Išgum, R.J. van Klaveren, M. Oudkerk, B. van Ginneken and W.P. Mali. "Comparing coronary artery calcium and thoracic aorta calcium for prediction of all-cause mortality and cardiovascular events on low-dose non-gated computed tomography in a high-risk population of heavy smokers", Atherosclerosis 2010;209:455-462. Abstract/PDF DOI PMID

  8. B. de Hoop, C.M. Schaefer-Prokop, H.A. Gietema, P.A. de Jong, B. van Ginneken, R.J. van Klaveren and M. Prokop. "Screening for lung cancer with digital chest radiography: sensitivity and number of secondary work-up CT examinations", Radiology 2010;255:629-637. Abstract/PDF DOI PMID

  9. Y. Arzhaeva, M. Prokop, K. Murphy, E.M. van Rikxoort, P.A. de Jong, H.A. Gietema, M.A. Viergever and B. van Ginneken. "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics 2010;37:63-73. Abstract/PDF DOI PMID

  10. H.A. Gietema, P. Zanen, A. Schilham, B. van Ginneken, R.J. van Klaveren, M. Prokop and J.W. Lammers. "Distribution of emphysema in heavy smokers: impact on pulmonary function", Respiratory Medicine 2010;104:76-82. Abstract/PDF DOI PMID

  11. I. Išgum, A. Rutten, M. Prokop, M.Staring, S. Klein, J.P.W. Pluim, M.A. Viergever and B. van Ginneken. "Automated aortic calcium scoring on low-dose chest computed tomography", Medical Physics 2010;37:714-723. Abstract/PDF DOI PMID

  12. M. Niemeijer, B. van Ginneken, M.J. Cree, A. Mizutani, G. Quellec, C.I. Sánchez, B. Zhang, R. Hornero, M. Lamard, C. Muramatsu, X. Wu, G. Cazuguel, J. You, A. Mayo, Q. Li, Y. Hatanaka, B. Cochener, C. Roux, F. Karray, M. Garcia, H. Fujita and M.D. Abràmoff. "Retinopathy online challenge: automatic detection of microaneurysms in digital color fundus photographs", IEEE Transactions on Medical Imaging 2010;29:185-195. Abstract/PDF DOI PMID

  13. E.M. van Rikxoort, I. Išgum, Y. Arzhaeva, M. Staring, S. Klein, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Adaptive local multi-atlas segmentation: application to the heart and the caudate nucleus", Medical Image Analysis 2010;14:39-49. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. G. Litjens, L. Hogeweg, A. Schilham, P. de Jong, M. Viergever and B. van Ginneken. "Simulation of nodules and diffuse infiltrates in chest radiographs using CT templates", in: Medical Image Computing and Computer-Assisted Intervention, volume 6362 of Lecture Notes in Computer Science, 2010, pages 396-403. Abstract/PDF DOI PMID

  2. S.E.A. Muenzing, B. van Ginneken and J.P.W. Pluim. "Knowledge Driven Regularization of the Deformation Field for PDE Based Non-Rigid Registration Algorithms", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 127-136. Abstract/PDF

  3. K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X. Deng and J.P.W. Pluim. "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", in: Medical Image Analysis for the Clinic - A Grand Challenge, 2010, pages 11-22. Abstract/PDF

  4. E. van Rikxoort, M. Galperin-Aizenberg, J.G. Goldin, T.T.J.P. Kockelkorn, B. van Ginneken and M.S. Brown. "Multi-classifier semi-supervised classification of tuberculosis patterns on chest CT scans", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 41-48. Abstract/PDF

  5. P.R. Snoeren, G. Litjens, B. van Ginneken and N. Karssemeijer. "Training a Computer Aided Detection System with Simulated Lung Nodules in Chest Radiographs", in: The Third International Workshop on Pulmonary Image Analysis, 2010, pages 139-149. Abstract/PDF

  6. E.J. Smit, J. Dankbaar, A.M. Mendrik, B. van Ginneken, E. Vonken and M. Prokop. "Reconstruction of High Quality CT Angiography from Noisy Cerebral CT Perfusion Data", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  7. C.I. Sánchez, M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Active learning for an efficient training strategy of computer-aided diagnosis systems: application to diabetic retinopathy screening", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 603-610. Abstract/PDF DOI PMID

  8. L. Hogeweg, C. Mol, P.A. de Jong, R. Dawson, H. Ayles and B. van Ginneken. "Fusion of local and global detection systems to detect tuberculosis in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 6363 of Lecture Notes in Computer Science, 2010, pages 650-657. Abstract/PDF DOI PMID

  9. L. Hogeweg, C. Mol, P.A. de Jong and B. van Ginneken. "Rib suppression in chest radiographs to improve classification of textural abnormalities", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240Y1-76240Y6. Abstract/PDF DOI

  10. I. Išgum, M. Prokop, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali, M.A. Viergever and B. van Ginneken. "Automatic coronary calcium scoring in low-dose non-ECG-synchronized thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240M1-76240M8. Abstract/PDF DOI

  11. A. Mendrik, E.P.A. Vonken, J.W. Dankbaar, M. Prokop and B. van Ginneken. "Noise filtering in thin-slice 4D cerebral CT perfusion scans", in: Medical Imaging, volume 7623 of Proceedings of the SPIE, 2010, pages 76230N1-76230N8. Abstract/PDF DOI

  12. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic determination of the artery vein ratio in retinal images", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240I1-76240I10. Abstract/PDF DOI

  13. E. van Dongen and B. van Ginneken. "Automatic segmentation of pulmonary vasculature in thoracic CT scans with local thresholding and airway wall removal", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 668-671. Abstract/PDF DOI

  14. B. van Ginneken. "Computer-aided diagnosis in chest imaging: how to improve performance and avoid reinventing the wheel", in: IEEE International Symposium on Biomedical Imaging, 2010, page 274. PDF DOI

  15. T.T.J.P. Kockelkorn, P.A. de Jong, H.A. Gietema, J.C. Grutters, M. Prokop and B. van Ginneken. "Interactive annotation of textures in thoracic CT scans", in: Medical Imaging, volume 7624 of Proceedings of the SPIE, 2010, pages 76240X1-76240X8. Abstract/PDF DOI

  16. T.T.J.P. Kockelkorn, E.M. van Rikxoort, J.C. Grutters and B. van Ginneken. "Interactive lung segmentation in CT scans with severe abnormalities", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 564-567. Abstract/PDF DOI

  17. P. Lo, B. van Ginneken and M. de Bruijne. "Vessel tree extraction using locally optimal paths", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 680-683. Abstract/PDF DOI

  18. E.M. van Rikxoort, J.G. Goldin, B. van Ginneken, M. Galperin-Aizenberg, C. Ni and M.S. Brown. "Interactively learning a patient specific k-nearest neighbor classifier based on confidence weighted samples", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 556-559. Abstract/PDF DOI

  19. C.I. Sánchez, M. Niemeijer, M.S.A. Suttorp-Schulten, M.D. Abràmoff and B. van Ginneken. "Improving hard exudate detection in retinal images through a combination of local and contextual information", in: IEEE International Symposium on Biomedical Imaging, 2010, pages 5-8. Abstract/PDF DOI


Abstracts

  1. C. Mol, B. van Ginneken, M. de Bruijne, P.A. de Jong, M. Oudkerk, A. Dirksen and P. Zanen. "Correction of Quantitative Emphysema Measures with Density Calibration Based on Measurements in the Trachea", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract

  2. L. Hogeweg, C. Mol, P.A. de Jong, H. Ayles, R. Dawson and B. van Ginneken. "Evaluation of a computer aided detection system for tuberculosis on chest radiographs in a high-burden setting", in: Annual Meeting of the Radiological Society of North America, 2010. Abstract


Theses

  1. A.M. Mendrik. "Noise Reduction and Vascular Enhancement in 4D CT Perfusion Scans", PhD thesis, Utrecht University, The Netherlands, 2010. Abstract/PDF URL

  2. B. de Hoop. "Lung Cancer Screening: Radiological Aspects", PhD thesis, Utrecht University, The Netherlands, 2010. Abstract/PDF URL


Other publications

  1. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng. "Medical Image Analysis for the Clinic: a Grand Challenge", 2010. Abstract/PDF URL

  2. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The Third International Workshop on Pulmonary Image Analysis", 2010. Abstract/PDF URL


2009

Papers in international journals

  1. X. Artaechevarria, D. Pérez-Martin, M. Ceresa, G. de Biurrun, D. Blanco, L.M. Montuenga, B. van Ginneken, C.O. de Solórzano and A. Muñoz-Barrutia. "Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT", Physics in Medicine and Biology 2009;54:7009-7024. Abstract/PDF DOI PMID

  2. B. van Ginneken, L. Hogeweg and M. Prokop. "Computer-aided diagnosis in chest radiography: beyond nodules", European Journal of Radiology 2009;72:226-230. Abstract/PDF DOI PMID

  3. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Fast detection of the optic disc and fovea in color fundus photographs", Medical Image Analysis 2009;13(6):859-870. Abstract/PDF DOI PMID

  4. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Information fusion for diabetic retinopathy CAD in digital color fundus photographs", IEEE Transactions on Medical Imaging 2009;28(5):775-785. Abstract/PDF DOI PMID

  5. D.W. de Boo, M. Prokop, M. Uffmann, B. van Ginneken and C.M. Schaefer-Prokop. "Computer-aided detection (CAD) of lung nodules and small tumours on chest radiographs", European Journal of Radiology 2009;72:218-225. Abstract/PDF DOI PMID

  6. A.M. Mendrik, E.-J. Vonken, A. Rutten, M.A. Viergever and B. van Ginneken. "Noise reduction in computed tomography scans using 3-d anisotropic hybrid diffusion with continuous switch", IEEE Transactions on Medical Imaging 2009;28:1585-1594. Abstract/PDF DOI PMID

  7. E.M. van Rikxoort, B. de Hoop, M.A. Viergever, M. Prokop and B. van Ginneken. "Automatic lung segmentation from thoracic computed tomography scans using a hybrid approach with error detection", Medical Physics 2009;36:2934-2947. Abstract/PDF DOI PMID

  8. K. Murphy, B. van Ginneken, A.M.R. Schilham, B.J. de Hoop, H.A. Gietema and M. Prokop. "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis 2009;13(5):757-770. Abstract/PDF DOI PMID

  9. T. Heimann, B. van Ginneken, M. Styner, Y. Arzhaeva, V. Aurich, C. Bauer, A. Beck, C. Becker, R. Beichel, G. Bekes, F. Bello, G. Binnig, H. Bischof, A. Bornik, P. Cashman, Y. Chi, A. Cordova, B. Dawant, M. Fidrich, J. Furst, D. Furukawa, L. Grenacher, J. Hornegger, D. Kainmuller, R. Kitney, H. Kobatake, H. Lamecker, T. Lange, J. Lee, B. Lennon, R. Li, S. Li, H.-P. Meinzer, G. Nemeth, D. Raicu, A.-M. Rau, E. van Rikxoort, M. Rousson, L. Rusko, K. Saddi, G. Schmidt, D. Seghers, A. Shimizu, P. Slagmolen, E. Sorantin, G. Soza, R. Susomboon, J. Waite, A. Wimmer and I. Wolf. "Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets", IEEE Transactions on Medical Imaging 2009;28:1251-1265. Abstract/PDF DOI PMID

  10. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Dissimilarity-based classification in the absence of local ground truth: application to the diagnostic interpretation of chest radiographs", Pattern Recognition 2009;42:1768-1776. Abstract/PDF DOI

  11. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen, G. Groenewegen and M. Prokop. "A comparison of six software packages for evaluation of solid lung nodules using semi-automated volumetry: what is the minimum increase in size to detect growth in repeated CT examinations", European Radiology 2009;19:800-808. Abstract/PDF DOI PMID

  12. I. Išgum, M. Staring, A. Rutten, M. Prokop, M. Viergever and B. van Ginneken. "Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans", IEEE Transactions on Medical Imaging 2009;28:1000-1010. Abstract/PDF DOI PMID

  13. M. Staring, J.P.W. Pluim, B.J. de Hoop, S. Klein, B. van Ginneken, H. Gietema, G. Nossent, C.M. Schaefer-Prokop, S. van de Vorst and M. Prokop. "Image Subtraction Facilitates Assessment of Volume and Density Change in Ground-Glass Opacities in Chest CT", Investigative Radiology 2009;44:61-66. Abstract/PDF DOI PMID

  14. E.M. van Rikxoort, B. de Hoop, S. van de Vorst, M. Prokop and B. van Ginneken. "Automatic segmentation of pulmonary segments from volumetric chest CT scans", IEEE Transactions on Medical Imaging 2009;28:621-630. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. A. Mendrik, E.P.A. Vonken, A. Waaijer, E. Smit, M. Prokop and B. van Ginneken. "Segmentation of arteries and veins on 4D CT perfusion scans for constructing arteriograms and venograms", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590Z1-72590Z7. Abstract/PDF DOI

  2. P. Lo, B. van Ginneken, J.M. Reinhardt and M. de Bruijne. "Extraction of Airways from CT (EXACT09)", in: The Second International Workshop On Pulmonary Image Analysis, 2009, pages 175-189. Abstract/PDF

  3. M. Niemeijer, M.K. Garvin, K. Lee, M. Sonka, B. van Ginneken and M.D. Abràmoff. "Automated Segmentation of the Retinal Vasculature Silhouettes in Isotropic 3D Optical Coherence Tomography Scans", in: Association for Research in Vision and Ophthalmology, 2009. Abstract

  4. X. Artaechevarria, A. Muñoz-Barrutia, B. van Ginneken and C.O. de Solórzano. "Fast murine airway segmentation and reconstruction in micro-CT images", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, pages 72620B1-72620B8. Abstract/PDF DOI

  5. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J.P.W. Pluim. "Evaluation of 4D-CT Lung Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5761 of Lecture Notes in Computer Science, 2009, pages 747-754. Abstract/PDF DOI

  6. S.E.A. Muenzing, K. Murphy, B. van Ginneken and J.P.W. Pluim. "Automatic detection of registration errors for quality assessment in medical image registration", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72590K1-72590K9. Abstract/PDF DOI

  7. E. van Rikxoort, W. Baggerman and B. van Ginneken. "Automatic segmentation of the airway tree from thoracic CT scans using a multi-threshold approach", in: The Second International Workshop on Pulmonary Image Analysis, 2009, pages 341-349. Abstract/PDF

  8. Y. Arzhaeva, L. Hogeweg, P.A. de Jong, M.A. Viergever and B. van Ginneken. "Global and Local Multi-valued Dissimilarity-Based Classification: Application to Computer-Aided Detection of Tuberculosis", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 724-731. Abstract/PDF DOI

  9. M. Niemeijer, M. Garvin, K. Lee, B. van Ginneken, M. Abràmoff and M. Sonka. "Registration of 3D spectral OCT volumes using 3D SIFT feature point matching", in: Medical Imaging, volume 7259 of Proceedings of the SPIE, 2009, pages 72591I-1-72591I-8. Abstract/PDF DOI

  10. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic classification of retinal vessels into arteries and veins", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601F1-72601F8. Abstract/PDF DOI

  11. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "A Linking Framework for Pixel Classification Based Retinal Vessel Segmentation", in: Medical Imaging, volume 7262 of Proceedings of the SPIE, 2009, pages 726216-1-726216-8. Abstract/PDF DOI

  12. E.M. van Rikxoort, M. Prokop, B. de Hoop, M.A. Viergever, J.P.W. Pluim and B. van Ginneken. "Automatic segmentation of the pulmonary lobes from fissures, airways, and lung borders: evaluation of robustness against missing data", in: Medical Image Computing and Computer-Assisted Intervention of Lecture Notes in Computer Science, 2009, pages 263-271. Abstract/PDF DOI PMID

  13. C.I. Sánchez, M. Niemeijer, T. Kockelkorn, M.D. Abràmoff and B. van Ginneken. "Active learning approach for detection of hard exudates, cotton wool spots, and drusen in retinal images", in: Medical Imaging, volume 7260 of Proceedings of the SPIE, 2009, pages 72601I1-72601I8. Abstract/PDF DOI


Abstracts

  1. B. van Ginneken, K. Murphy, E.M. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P.A. de Jong and H. Gietema. "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  2. B. de Hoop, P. Zanen, H. Gietema, B. van Ginneken, H. Groen and M. Prokop. "The Predictive Value of CT Quantified Pulmonary Emphysema on the Decline of Lung Function in Chronic Smokers: Results of a Long-term Follow-up Study", in: Annual Meeting of the Radiological Society of North America, 2009.

  3. I. Išgum, B. van Ginneken, P.C. Jacobs, M.J. Gondrie, W.P.T.M. Mali and M. Prokop. "Automatic determination of cardiovascular risk from thoracic CT scans using a coronary calcium atlas", in: Annual Meeting of the Radiological Society of North America, 2009.

  4. A.M. Mendrik, E.P.A. Vonken, E.J. Smit, B. van Ginneken and M. Prokop. "Reduction of Venous Overprojection Using Cerebral Arteriograms from CT Perfusion Scans of Subarachnoid Hemorrhage Patients", in: Annual Meeting of the Radiological Society of North America, 2009.

  5. K. Murphy, B. van Ginneken, J.P.W. Pluim, T.A. Altes, M. Prokop and E.E. de Lange. "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", in: Annual Meeting of the Radiological Society of North America, 2009.

  6. E.M. van Rikxoort, M. Prokop, B. de Hoop, J.P.W. Pluim and B. van Ginneken. "Automatic Segmentation of the Pulmonary Lobes from Computed Tomography Chest CT Scans: Robustness Against Incomplete Fissures by Including Contextual Information", in: Annual Meeting of the Radiological Society of North America, 2009. Abstract

  7. I. Išgum, P.C.A. Jacobs, M. Gondrie, B. van Ginneken, M. Oudkerk, W.P.T.M. Mali, Y. van der Graaf and M. Prokop. "Cardiovascular risk assessment in lung cancer screening scans: do coronary and aortic calcium scores yield comparable risks for individual subjects?", in: European Congress of Radiology, 2009. Abstract

  8. E.J. Smit, A.M. Mendrik, A. Waaijer, G. Bertolini, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Reconstruction of high-quality CTA from noisy cerebral CT perfusion data", in: European Congress of Radiology, 2009. Abstract


Theses

  1. E.M. van Rikxoort. "Segmentation of anatomical structures in chest CT scans", PhD thesis, Utrecht University, The Netherlands, 2009. Abstract/PDF URL

  2. Y. Arzhaeva. "Computer-aided detection and quantification of interstitial lung disease from computed tomography and chest radiography", PhD thesis, Utrecht University, The Netherlands, 2009. Abstract/PDF URL


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, J.R. McClelland, K. Mori, A. Reeves and J. Reinhardt. "The Second International Workshop on Pulmonary Image Analysis", 2009. Abstract/PDF URL


2008

Papers in international journals

  1. S.G. Armato and B. van Ginneken. "Anniversary paper: image processing and manipulation through the pages of Medical Physics", Medical Physics 2008;35:4488-4500. Abstract/PDF DOI PMID

  2. B. van Ginneken. "Computer-Aided Diagnosis in Thoracic Computed Tomography", Imaging Decisions MRI 2008;12:11-22. Abstract/PDF DOI

  3. B.C. Stoel, D.G. Parr, E.M. Bakker, H. Putter, J. Stolk, H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Can the extent of low-attenuation areas on CT scans really demonstrate changes in the severity of emphysema?", Radiology 2008;247:293-4; author reply 294. PDF DOI PMID

  4. M.D. Abràmoff, M. Niemeijer, M.S.A. Suttorp-Schulten, M.A. Viergever, S.R. Russell and B. van Ginneken. "Evaluation of a system for automatic detection of diabetic retinopathy from color fundus photographs in a large population of patients with diabetes", Diabetes Care 2008;31(2):193-198. Abstract/PDF DOI PMID

  5. E.M. van Rikxoort, B. van Ginneken, M. Klik and M. Prokop. "Supervised enhancement filters: application to fissure detection in chest CT scans", IEEE Transactions on Medical Imaging 2008;27:1-10. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. E.M. van Rikxoort, M. de Bruijne and B. van Ginneken. "Integrating local voxel classification and global shape models for medical image segmentation", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 69144J-1 - 69144J-6. PDF DOI

  2. B. de Hoop, B. van Ginneken, C.M. Schaefer-Prokop, P.A. de Jong, H. Gietema and M. Prokop. "Workup of suspicious lesions on digital chest radiography: estimation of the number of unnecessary follow-up CT scans in relation to the threshold of radiological suspicion on chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  3. B. van Ginneken, A. Tan, K. Murphy, B.J. de Hoop and M. Prokop. "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", in: Medical Imaging, volume 6915 of Proceedings of the SPIE, 2008, pages 69150X1-69150X10. Abstract/PDF DOI

  4. M. Niemeijer, M.K. Garvin, B. van Ginneken, M. Sonka and M.D. Abràmoff. "Vessel segmentation in 3D spectral OCT scans of the retina", in: Medical Imaging, volume 6914 of Proceedings of the SPIE, 2008. Abstract/PDF DOI

  5. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring. "Quantitative Assessment of Registration in Thoracic CT", in: The First International Workshop on Pulmonary Image Analysis, 2008, pages 203-211. Abstract/PDF

  6. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automated localization of the optic disc and the fovea", in: Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2008, pages 3538-3541. Abstract/PDF DOI PMID

  7. E.M. van Rikxoort, I. Išgum, M. Staring, S. Klein and B. van Ginneken. "Adaptive Local Multi-Atlas Segmentation: Application to Heart Segmentation in Chest CT Scans", in: Medical Imaging of Proceedings of the SPIE, 2008, pages 691407-1-691407-6. Abstract/PDF DOI

  8. B. van Ginneken, W. Baggerman and E.M. van Rikxoort. "Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 5241 of Lecture Notes in Computer Science, 2008, pages 219-226. Abstract/PDF DOI PMID

  9. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J.P.W. Pluim. "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", in: Medical Image Computing and Computer-Assisted Intervention, volume 5242 of Lecture Notes in Computer Science, 2008. Abstract/PDF DOI PMID


Abstracts

  1. B. van Ginneken, B. de Hoop and M. Prokop. "Automatic Estimation of Three-Dimensional Lung Volume from Posterior-Anterior and Lateral Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2008.

  2. B. van Ginneken, B. de Hoop, E.M. van Rikxoort, K. Murphy and M. Prokop. "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  3. B. van Ginneken, E.M. van Rikxoort, W. Baggerman, B. de Hoop and M. Prokop. "Automatic Extraction and Anatomical Labeling of the Airway Tree from Inspiration and Expiration Thoracic CT Scans", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  4. B. de Hoop, H. Gietema, B. van Ginneken, P. Zanen and M. Prokop. "Variability of semi-automated pulmonary nodule volume measurements: A comparison of 6 lung nodule evaluation software packages", in: Annual Meeting of the Radiological Society of North America, 2008.

  5. K. Murphy, B. van Ginneken, E.M. van Rikxoort, B. de Hoop, J.P.W. Pluim and M. Prokop. "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract

  6. K. Murphy, M. Prokop, C.M. Schaefer-Prokop, H. Gietema, G.D. Nossent, B. van Ginneken, J.P.W. Pluim and Y. Arzhaeva. "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", in: Annual Meeting of the Radiological Society of North America, 2008.

  7. E.M. van Rikxoort, B. van Ginneken, J.G. Goldin, M.S. Brown and M. Prokop. "Automatic Quantification of Completeness of Pulmonary Fissures on a Large Database", in: Annual Meeting of the Radiological Society of North America, 2008. Abstract


Other publications

  1. M. Brown, M. de Bruijne, B. van Ginneken, A. Kiraly, J.-M. Kuhnigk, C. Lorenz, K. Mori and J. Reinhardt. "The First International Workshop on Pulmonary Image Analysis", 2008. Abstract/PDF URL


2007

Papers in international journals

  1. Y. Arzhaeva, M. Prokop, D.M.J. Tax, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs using a reference standard based on computed tomography", Medical Physics 2007;34:4798-4809. Abstract/PDF DOI PMID

  2. J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation and labeling in computed tomography scans using a general framework for detection, recognition and segmentation of objects in volumetric data", Medical Image Analysis 2007;11:35-46. Abstract/PDF DOI PMID

  3. H.A. Gietema, A.M. Schilham, B. van Ginneken, R.J. van Klaveren, J.W.J. Lammers and M. Prokop. "Monitoring of smoking-induced emphysema with CT in a lung cancer screening setting: detection of real increase in extent of emphysema", Radiology 2007;244:890-897. Abstract/PDF DOI PMID

  4. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Detection of coronary calcifications from computed tomography scans for automated risk assessment of coronary artery disease", Medical Physics 2007;34:1450-1461. Abstract/PDF DOI PMID

  5. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Segmentation of the optic disc, macula and vascular arch in fundus photographs", IEEE Transactions on Medical Imaging 2007;26(1):116-127. Abstract/PDF DOI PMID

  6. M. Niemeijer, B. van Ginneken, S.R. Russel, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automated detection and differentiation of drusen, exudates, and cotton-wool spots in digital color fundus photographs for diabetic retinopathy diagnosis", Investigative Ophthalmology and Visual Science 2007;48(5):2260-2267. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. E.M. van Rikxoort, Y. Arzhaeva and B. van Ginneken. "A multi-atlas approach to automatic segmentation of the caudate nucleus in MR brain images", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 29-36. Abstract/PDF

  2. Y. Arzhaeva, E.M. van Rikxoort and B. van Ginneken. "Automated segmentation of caudate nucleus in MR brain images with voxel classification", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 65-72. PDF

  3. B. van Ginneken, T. Heimann and M. Styner. "3D Segmentation in the Clinic: A Grand Challenge", in: 3D Segmentation in the Clinic: A Grand Challenge, 2007, pages 7-15. Abstract/PDF

  4. K. Murphy, A.M.R. Schilham, H. Gietema, M. Prokop and B. van Ginneken. "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", in: Medical Imaging, volume 6514 of Proceedings of the SPIE, 2007, pages 651410-1-651410-12. Abstract/PDF DOI


Abstracts

  1. H. Gietema, P. Zanen, A.M.R. Schilham, B. van Ginneken, R. van Klaveren and M. Prokop. "Distribution of emphysema in heavy smokers: Impact on extent of airflow limitation and gas exchange impairment", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  2. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring in the Aorta in Low Dose Non-contrast-enhanced CT Scans of the Thorax", in: Annual Meeting of the Radiological Society of North America, 2007. PDF

  3. A.M. Mendrik, E.P.A. Vonken, B. van Ginneken and M. Prokop. "Automatic segmentation of arteries and veins in 4D cerebral CT perfusion scans", in: Annual Meeting of the Radiological Society of North America, 2007.

  4. E.M. van Rikxoort, M. Prokop and B. van Ginneken. "Automatic Lung Segmentation from Chest CT Scans Using a Hybrid Algorithm Robust against Pathology", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  5. E.M. van Rikxoort, M. Prokop, B. de Hoop, H. Gietema and B. van Ginneken. "Automatic Estimation of Lobar and Segmental Variation of Emphysema Distribution in Chronic Smokers", in: Annual Meeting of the Radiological Society of North America, 2007. Abstract

  6. Y. Arzhaeva, K. Murphy, M. Prokop, C.M. Schaefer-Prokop and B. van Ginneken. "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", in: Annual Meeting of the Radiological Society of North America, 2007.

  7. Y. Arzhaeva, M. Prokop, P.A. de Jong, C.M. Schaefer-Prokop and B. van Ginneken. "Computer-aided detection of interstitial abnormalities in chest radiographs", in: Annual Meeting of the Radiological Society of North America, 2007.


Theses

  1. I. Išgum. "Computer-aided detection and quantification of arterial calcifications with CT", PhD thesis, Utrecht University, The Netherlands, 2007. Abstract/PDF URL


Other publications

  1. T. Heimann, M. Styner and B. van Ginneken. "3D Segmentation in the Clinic: A Grand Challenge", 2007.


2006

Papers in international journals

  1. B. van Ginneken, M.B. Stegmann and M. Loog. "Segmentation of anatomical structures in chest radiographs using supervised methods: a comparative study on a public database", Medical Image Analysis 2006;10:19-40. Abstract/PDF DOI PMID

  2. M. Loog, B. van Ginneken and A.M.R. Schilham. "Filter learning: application to suppression of bony structures from chest radiographs", Medical Image Analysis 2006;10:826-840. Abstract/PDF DOI PMID

  3. J.M. Reinhardt, B. van Ginneken and M. Sonka. "Special Issue on Pulmonary Imaging", IEEE Transactions on Medical Imaging 2006;25:381-384. PDF DOI

  4. A.M.R. Schilham, B. van Ginneken and M. Loog. "A computer-aided diagnosis system for detection of lung nodules in chest radiographs with an evaluation on a public database", Medical Image Analysis 2006;10:247-258. Abstract/PDF DOI PMID

  5. I.C. Sluimer, M. Prokop, I. Hartmann and B. van Ginneken. "Automated classification of hyperlucency, fibrosis, ground glass, solid and focal lesions in high resolution CT of the lung", Medical Physics 2006;33:2610-2620. Abstract/PDF DOI PMID

  6. I.C. Sluimer, A.M.R. Schilham, M. Prokop and B. van Ginneken. "Computer analysis of computed tomography scans of the lung: a survey", IEEE Transactions on Medical Imaging 2006;25:385-405. Abstract/PDF DOI PMID

  7. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Local noise weighted filtering for emphysema scoring of low-dose CT images", IEEE Transactions on Medical Imaging 2006;25:451-463. Abstract/PDF DOI PMID

  8. M. Loog and B. van Ginneken. "Segmentation of the posterior ribs in chest radiographs using iterated contextual pixel classification", IEEE Transactions on Medical Imaging 2006;25:602-11. Abstract/PDF DOI PMID

  9. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Image structure clustering for image quality verification of color retina images in diabetic retinopathy screening", Medical Image Analysis 2006;10(6):888-898. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. M.A.J. Klik, E.M. van Rikxoort, J.F. Peters, H.A. Gietema, M. Prokop and B. van Ginneken. "Improved classification of pulmonary nodules by automated detection of benign subpleural lymph nodes", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 494-497. Abstract/PDF DOI

  2. M. Loog and B. van Ginneken. "Bony Structure Suppression in Chest Radiographs", in: Computer Vision Approaches to Medical Image Analysis, volume 4241 of Lecture Notes in Computer Science, 2006, pages 166-177. Abstract/PDF DOI

  3. A.M. Mendrik, E.P.A. Vonken, A.M.R. Schilham, M.A. Viergever and B. van Ginneken. "Hybrid diffusion compared with existing diffusion schemes on simulated low dose CT scans", in: IEEE International Symposium on Biomedical Imaging, 2006, pages 1008-1011. Abstract/PDF DOI

  4. E.M. van Rikxoort and B. van Ginneken. "A pattern recognition approach to enhancing structures in 3D CT data", in: Medical Imaging of Proceedings of the SPIE, 2006, pages 61441O-1-61441O-8. Abstract/PDF DOI

  5. A.M.R. Schilham and B. van Ginneken. "Simulating nodules in chest radiographs with real nodules from multi-slice CT images", in: Medical Imaging of Proceedings of the SPIE, 2006, pages 614456-1-614456-8. Abstract/PDF DOI

  6. Y. Arzhaeva, B. van Ginneken and D.M.J. Tax. "Image classification from generalized image distance features: application to detection of interstitial disease in chest radiographs", in: International Conference on Pattern Recognition, 2006. Abstract/PDF DOI

  7. Y. Arzhaeva, D.M.J. Tax and B. van Ginneken. "Improving computer-aided diagnosis of interstitial disease in chest radiographs by combining one-class and two-class classifiers", in: Medical Imaging, volume 6144 of Proceedings of the SPIE, 2006, pages 614458-1-614458-8. Abstract/PDF DOI

  8. B. van Ginneken. "Supervised probabilistic segmentation of pulmonary nodules in CT scans", in: Medical Image Computing and Computer-Assisted Intervention, volume 4191 of Lecture Notes in Computer Science, 2006, pages 912-919. Abstract/PDF DOI PMID

  9. B. van Ginneken and A. Mendrik. "Image Denoising with k-nearest Neighbor and Support Vector Regression", in: International Conference on Pattern Recognition, volume 3, 2006, pages 603-606. Abstract/PDF DOI


Abstracts

  1. B. van Ginneken, M.A.J. Klik, E.M. van Rikxoort, H. Gietema, J. Peters and M. Prokop. "Computer-aided diagnosis for distinguishing benign perifissural opacities from other pulmonary nodules in computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract/PDF

  2. E.M. van Rikxoort, H. Gietema, M. Prokop and B. van Ginneken. "Fully automatic segmentation of pulmonary segments from computed tomography chest scans", in: Annual Meeting of the Radiological Society of North America, 2006. Abstract


Theses

  1. M. Niemeijer. "Automatic detection of diabetic retinopathy in digital fundus photographs", PhD thesis, Utrecht University, The Netherlands, 2006. Abstract/PDF URL


2005

Papers in international journals

  1. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction of image features using the canonical contextual correlation projection", Pattern Recognition 2005;38:2409-2418. Abstract/PDF DOI

  2. M. Niemeijer, B. van Ginneken, J. Staal, M.S.A. Suttorp-Schulten and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", IEEE Transactions on Medical Imaging 2005;24(5):584-592. Abstract/PDF DOI PMID

  3. I. Sluimer, M. Prokop and B. van Ginneken. "Towards automated segmentation of the pathological lung in CT", IEEE Transactions on Medical Imaging 2005;24:1025-1038. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. I. Išgum, B. van Ginneken, A. Rutten and M. Prokop. "Automated coronary calcification detection and scoring", in: 4th International Symposium on Image and Signal Processing and Analysis, 2005, pages 127-132. Abstract/PDF

  2. M. Niemeijer, B. van Ginneken, F. ter Haar and M.D. Abràmoff. "Automatic Detection of the Optic Disc, Fovea and Vascular Arch in Digital Color Photographs of the Retina", in: Proceedings of the British Machine Vision Conference, 2005, pages 109-118. Abstract/PDF

  3. A.M.R. Schilham, M. Prokop, H. Gietema and B. van Ginneken. "Local noise reduction for emphysema scoring in low-dose CT images", in: Medical Imaging, volume 5747 of Proceedings of the SPIE, 2005, pages 921-929. Abstract/PDF DOI

  4. M. Niemeijer, M.D. Abràmoff and B. van Ginneken. "Automatic detection of the presence of bright lesions in color fundus photographs", in: The 3rd European Medical and Biological Engineering Conference, 2005, pages 1832 (1-6). Abstract/PDF


Abstracts

  1. B. van Ginneken, A.M.R. Schilham, H. Gietema and M. Prokop. "Automatic correction for the influence of inspiration on pulmonary emphysema quantification from multidetector CT scans", in: Annual Meeting of the Radiological Society of North America, 2005.

  2. B. van Ginneken, I.C. Sluimer, M. Prokop and I. Hartmann. "Automatic detection of the presence of hyperlucencies, fibrosis, ground-glass, consolidations, and focal abnormalities in high resolution CT (HRCT) lung data", in: Annual Meeting of the Radiological Society of North America, 2005.

  3. I. Išgum, A. Rutten, M. Prokop and B. van Ginneken. "Automated Calcium Scoring for Risk Assessment of Coronary Artery Disease", in: Annual Meeting of the Radiological Society of North America, 2005.

  4. A.M.R. Schilham and B. van Ginneken. "Computer-aided diagnosis as a second reader for nodule detection in chest radiographs versus single and double reading", in: European Congress of Radiology, 2005. Abstract

  5. A.M.R. Schilham, B. van Ginneken, H. Gietema and M. Prokop. "Noise Filtering for Reliable Emphysema Quantification in Thin-slice Low-dose CT Images", in: Annual Meeting of the Radiological Society of North America, 2005.


Theses

  1. I.C. Sluimer. "Automated image analysis of the pathological lung in CT", PhD thesis, Utrecht University, The Netherlands, 2005. Abstract/PDF URL


Patents

  1. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection of Red Lesions in Digital Color Fundus Photographs", 2005, United States Patent, patent number 7,474,775. URL


2004

Papers in international journals

  1. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Interactive segmentation of abdominal aortic aneurysms in CTA images", Medical Image Analysis 2004;8:127-138. Abstract/PDF DOI PMID

  2. I. Išgum, B. van Ginneken and M. Olree. "Automatic detection of calcifications in the aorta from CT scans of the abdomen", Academic Radiology 2004;11:247-257. Abstract/PDF DOI PMID

  3. J.J. Staal, M.D. Abràmoff, M. Niemeijer, M.A. Viergever and B. van Ginneken. "Ridge Based Vessel Segmentation in Color Images of the Retina", IEEE Transactions on Medical Imaging 2004;23(4):501-509. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. B. van Ginneken and M. Loog. "Pixel Position Regression - Application to medical image segmentation", in: International Conference on Pattern Recognition, 2004, pages 718-721. Abstract/PDF DOI

  2. I. Išgum, B. van Ginneken and M. Prokop. "A pattern recognition approach to automated coronary calcium scoring", in: International Conference on Pattern Recognition, 2004. Abstract/PDF DOI

  3. M. Loog and B. van Ginneken. "Static posterior probability fusion for signal detection: applications in the detection of interstitial diseases in chest radiographs", in: International Conference on Pattern Recognition, 2004, pages 644-647. Abstract/PDF DOI

  4. M. Loog, B. van Ginneken and R.P.W. Duin. "Dimensionality reduction by canonical contextual correlation projections", in: European Conference on Computer Vision, volume 3021 of Lecture Notes in Computer Science, 2004, pages 562-573. Abstract/PDF DOI

  5. M. Loog, B. van Ginneken and M. Nielsen. "Detection of interstitial lung disease in PA chest radiographs", in: Medical Imaging, volume 5368 of Proceedings of the SPIE, 2004, pages 848-855. Abstract/PDF DOI

  6. I.C. Sluimer, M. Niemeijer and B. van Ginneken. "Lung field segmentation from thin-slice CT scans in presence of severe pathology", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 1447-1455. Abstract/PDF DOI

  7. J.J. Staal, B. van Ginneken and M.A. Viergever. "Automatic rib segmentation in CT data", in: Computer Vision Approaches to Medical Image Analysis and Mathematical Methods in Biomedical Image Analysis, volume 3117 of Lecture Notes in Computer Science, 2004, pages 193-204. Abstract/PDF

  8. M. Niemeijer, J.J. Staal, B. van Ginneken, M. Loog and M.D. Abràmoff. "Comparative Study of Retinal Vessel Segmentation Methods on a New Publicly Available Database", in: Medical Imaging, volume 5370 of Proceedings of the SPIE, 2004, pages 648-656. Abstract/PDF DOI


Theses

  1. M. Loog. "Supervised Dimensionality Reduction and Contextual Pattern Recognition in Medical Image Processing", PhD thesis, Utrecht University, The Netherlands, 2004. Abstract/PDF URL

  2. J.J. Staal. "Segmentation of elongated structures in medical images", PhD thesis, Utrecht University, The Netherlands, 2004. Abstract/PDF URL


2003

Papers in international journals

  1. B. van Ginneken. "Computerized detection of interstitial disease in chest radiographs", Medical Imaging Technology 2003;21:15-20.

  2. B. van Ginneken and B.M. ter Haar Romeny. "Multi-scale texture classification from generalized locally orderless images", Pattern Recognition 2003;36:899-911. Abstract/PDF DOI

  3. I. Išgum and B. van Ginneken. "CT segmentation programs extract calcifications", Diagnostic Imaging Europe 2003;19:11-16. Abstract/PDF

  4. I.C. Sluimer, P.F. van Waes, M.A. Viergever and B. van Ginneken. "Computer-aided diagnosis in high-resolution CT of the lungs", Medical Physics 2003;30:3081-3090. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, L.W. Bartels, M.J. van der Laan, J.D. Blankensteijn, W.J. Niessen and M.A. Viergever. "Automated Segmentation of Abdominal Aortic Aneurysms in Multi-spectral MR Images", in: Medical Image Computing and Computer-Assisted Intervention, volume 2879 of Lecture Notes in Computer Science, 2003, pages 538-545. Abstract/PDF DOI

  2. M. de Bruijne, B. van Ginneken, W.J. Niessen, M. Loog and M.A. Viergever. "Model-based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1560-1571. Abstract/PDF DOI

  3. B. van Ginneken, M. de Bruijne, M. Loog and M.A. Viergever. "Interactive Shape Models", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1206-1216. Abstract/PDF DOI

  4. I. Išgum, B. van Ginneken and M.A. Viergever. "Automatic detection of calcifications in the aorta from abdominal CT scans", in: Computer Assisted Radiology and Surgery, 2003, pages 1037-1042.

  5. M. Loog, B. van Ginneken and M.A. Viergever. "Segmenting the posterior ribs in chest radiographs by iterated contextual pixel classification", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 609-618. Abstract/PDF DOI

  6. M. Niemeijer, B. van Ginneken, C. Maas, F.J.A. Beek and M.A. Viergever. "Assessing the Skeletal Age From a Hand Radiograph: Automating the Tanner-Whitehouse Method", in: Medical Imaging, volume 5032 of Proceedings of the SPIE, 2003, pages 1197-1205. Abstract/PDF DOI

  7. A.M.R. Schilham, B. van Ginneken and M. Loog. "Multi-scale nodule detection in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 2878 of Lecture Notes in Computer Science, 2003, pages 602-609. Abstract/PDF DOI

  8. M. de Bruijne, B. van Ginneken, M.A. Viergever and W.J. Niessen. "Adapting Active Shape Models for 3D segmentation of tubular structures in medical images", in: Information Processing in Medical Imaging, volume 2732 of Lecture Notes in Computer Science, 2003, pages 136-147. Abstract/PDF DOI PMID

  9. M. Niemeijer, B. van Ginneken and M.D. Abràmoff. "Automatic Detection and Classification of Microaneurysms and Small Hemors in Colour Fundus Photographs", in: European Journal of Ophthalmology, volume 13, 2003, page 226.


Abstracts

  1. A.M.R. Schilham, B. van Ginneken and M. Loog. "Influence of the Number of Training Samples for Computer-Aided Detection of Lung Nodules in Chest Radiographs", in: Annual Meeting of the Radiological Society of North America, 2003.

  2. I.C. Sluimer, P.F.M.G. van Waes and B. van Ginneken. "Texture analysis for automated classification of lung HRCT images", in: Annual Meeting of the Radiological Society of North America, 2003.


2002

Papers in international journals

  1. B. van Ginneken, S. Katsuragawa, B.M. ter Haar Romeny, K. Doi and M.A. Viergever. "Automatic detection of abnormalities in chest radiographs using local texture analysis", IEEE Transactions on Medical Imaging 2002;21:139-149. Abstract/PDF DOI PMID

  2. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "Active shape model segmentation with optimal features", IEEE Transactions on Medical Imaging 2002;21:924-933. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. M. de Bruijne, B. van Ginneken, W.J. Niessen, J.B.A. Maintz and M.A. Viergever. "Active shape model based segmentation of abdominal aortic aneurysms in CTA images", in: Medical Imaging, volume 4684 of Proceedings of the SPIE, 2002, pages 463-474. Abstract/PDF DOI

  2. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Automatic segmentation and texture analysis of PA chest radiographs to detect abnormalities related to interstitial disease and tuberculosis", in: Computer Assisted Radiology and Surgery, 2002, pages 685-688.

  3. M. Loog and B. van Ginneken. "Supervised segmentation by Iterated Contextual Pixel Classification", in: International Conference on Pattern Recognition, 2002, pages 925-928. Abstract/PDF DOI

  4. I.C. Sluimer and B. van Ginneken. "Detection of abnormal tissue in HRCT scans of the chest", in: Computer Assisted Radiology and Surgery, 2002, page 1101.

  5. J.J. Staal, S.N. Kalitzin, B. van Ginneken, M.D. Abràmoff, T. Berendschot and M.A. Viergever. "Classifying convex sets for vessel detection in retinal images", in: IEEE International Symposium on Biomedical Imaging, 2002, pages 269-272. Abstract/PDF DOI


2001

Papers in international journals

  1. B. van Ginneken, B.M. ter Haar Romeny and M.A. Viergever. "Computer-aided diagnosis in chest radiography: a survey", IEEE Transactions on Medical Imaging 2001;20:1228-1241. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. B. van Ginneken. "Towards a clinical chest workstation", in: Proceedings of VISIM, 2001.

  2. B. van Ginneken, A.F. Frangi, J.J. Staal, B.M. ter Haar Romeny and M.A. Viergever. "A non-linear gray-level appearance model improves active shape model segmentation", in: IEEE Workshop on Mathematical Models in Biomedical Image Analysis, 2001, pages 205-212. Abstract/PDF DOI


Theses

  1. B. van Ginneken. "Computer-aided diagnosis in chest radiography", PhD thesis, Utrecht University, The Netherlands, 2001. Abstract/PDF URL


2000

Papers in international journals

  1. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", Journal of Visual Communication and Image Representation 2000;11:196-208. Abstract/PDF DOI

  2. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", Medical Physics 2000;27:2445-2455. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. B. van Ginneken and B.M. ter Haar Romeny. "Automatic delineation of ribs in frontal chest radiographs", in: Medical Imaging, volume 3979 of Proceedings of the SPIE, 2000, pages 825-836. Abstract/PDF DOI


Abstracts

  1. T. van Walsum, B. van Ginneken, J.J. Staal, E.J. Vonken and M.A. Viergever. "ImageXplorer (iX), an integrated Windows NT programming environment for rapid development of medical imaging applications", in: European Congress of Radiology, 2000.


1999

Papers in international journals

  1. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real world surfaces", ACM Transactions on Graphics 1999;18:1-34. Abstract/PDF DOI

  2. B. van Ginneken, J.J. Koenderink and K.J. Dana. "Texture histograms as a function of irradiation and viewing direction", International Journal of Computer Vision 1999;31:169-184. Abstract/PDF DOI


Papers in conference proceedings

  1. B. van Ginneken and B.M. ter Haar Romeny. "Applications of locally orderless images", in: Scale-Space Theories in Computer Vision, volume 1682 of Lecture Notes in Computer Science, 1999, pages 10-21. Abstract/PDF DOI

  2. B. van Ginneken and B.M. ter Haar Romeny. "Automatic segmentation of lung fields in chest radiographs", in: Medical Image Computing and Computer-Assisted Intervention, volume 1679 of Lecture Notes in Computer Science, 1999, pages 184-191. Abstract/PDF DOI


1998

Papers in international journals

  1. B. van Ginneken, M. Stavridi and J.J. Koenderink. "Diffuse and specular reflectance from rough surfaces", Applied Optics 1998;37:130-139. Abstract/PDF DOI PMID


1997

Papers in international journals

  1. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface bidirectional reflection distribution function and the texture of bricks and tiles", Applied Optics 1997;36:3717-3725. Abstract/PDF DOI PMID


Papers in conference proceedings

  1. K.J. Dana, B. van Ginneken, S.K. Nayar and J.J. Koenderink. "Reflectance and texture of real-world surfaces", in: Computer Vision and Pattern Recognition, 1997, pages 151-157. Abstract/PDF DOI


1996

Papers in conference proceedings

  1. F. Leymarie, A. de la Fortelle, J.J. Koenderink, A.M.L. Kappers, M. Stavridi, B. van Ginneken, S. Muller, S. Krake, O. Faugeras, L. Robert, C. Gauclin, S. Laveau and C. Zeller. "REALISE: reconstruction of REALity from Image SEquences", in: International Conference on Image Processing, 1996, pages 651-654. Abstract/PDF DOI

  2. M. Stavridi, B. van Ginneken and J.J. Koenderink. "Surface BRDF and texture of bricks", in: Three-Dimensional and Unconventional Imaging for Industrial Inspection and Metrology, volume 2599 of Proceedings of the SPIE, 1996, pages 406-417. Abstract DOI