Publications of Jean-Paul Charbonnier

Papers in international journals

1. L. Boulogne, J. Charbonnier, C. Jacobs, E. van der Heijden and B. van Ginneken, "Estimating lung function from computed tomography at the patient and lobe level using machine learning", Medical Physics, 2024.
   Abstract DOI PMID
2. W. Xie, C. Jacobs, J. Charbonnier and B. van Ginneken, "Dense regression activation maps for lesion segmentation in CT scans of COVID-19 patients", Medical Image Analysis, 2023;86:102771.
   Abstract DOI PMID Code Cited by ~3
3. W. Xie, C. Jacobs, J. Charbonnier, D. Slebos and B. van Ginneken, "Emphysema subtyping on thoracic computed tomography scans using deep neural networks", Scientific Reports, 2023;13:14147.
   Abstract DOI Cited by ~1
4. C. Pistenmaa, P. Nardelli, S. Ash, C. Come, A. Diaz, F. Rahaghi, R. Barr, K. Young, G. Kinney, J. Simmons, R. Wade, J. Wells, J. Hokanson, G. Washko, R. José San Estépar, J. Crapo, E. Silverman, B. Make, E. Regan, T. Beaty, P. Castaldi, M. Cho, D. DeMeo, A. El Boueiz, M. Foreman, A. Ghosh, L. Hayden, C. Hersh, J. Hetmanski, B. Hobbs, J. Hokanson, W. Kim, N. Laird, C. Lange, S. Lutz, M. McDonald, D. Prokopenko, M. Moll, J. Morrow, D. Qiao, E. Regan, A. Saferali, P. Sakornsakolpat, E. Silverman, E. Wan, J. Yun, J. Centeno, J. Charbonnier, H. Coxson, C. Galban, M. Han, E. Hoffman, S. Humphries, F. Jacobson, P. Judy, E. Kazerooni, A. Kluiber, D. Lynch, P. Nardelli, J. Newell, A. Notary, A. Oh, E. Regan, J. Ross, R. Jose San Estepar, J. Schroeder, J. Sieren, B. Stoel, J. Tschirren, E. Van Beek, B. Ginneken, E. van Rikxoort, G. Sanchez- Ferrero, L. Veitel, G. Washko, C. Wilson, R. Jensen, D. Everett, J. Crooks, K. Pratte, M. Strand, C. Wilson, J. Hokanson, E. Austin, G. Kinney, S. Lutz, K. Young, S. Bhatt, J. Bon, A. Diaz, M. Han, B. Make, S. Murray, E. Regan, X. Soler, C. Wilson, R. Bowler, K. Kechris, F. Banaei-Kashani, J. Curtis, P. Pernicano, N. Hanania, M. Atik, A. Boriek, K. Guntupalli, E. Guy, A. Parulekar, D. DeMeo, C. Hersh, F. Jacobson, G. Washko, R. Barr, J. Austin, B. D'Souza, B. Thomashow, N. MacIntyre, H. McAdams, L. Washington, C. McEvoy, J. Tashjian, R. Wise, R. Brown, N. Hansel, K. Horton, A. Lambert, N. Putcha, R. Casaburi, A. Adami, M. Budoff, H. Fischer, J. Porszasz, H. Rossiter, W. Stringer, A. Sharafkhaneh, C. Lan, C. Wendt, B. Bell, K. Kunisaki, E. Flenaugh, H. Gebrekristos, M. Ponce, S. Terpenning, G. Westney, R. Bowler, D. Lynch, R. Rosiello, D. Pace, G. Criner, D. Ciccolella, F. Cordova, C. Dass, G. D'Alonzo, P. Desai, M. Jacobs, S. Kelsen, V. Kim, A. Mamary, N. Marchetti, A. Satti, K. Shenoy, R. Steiner, A. Swift, I. Swift, M. Vega-Sanchez, M. Dransfield, W. Bailey, S. Bhatt, A. Iyer, H. Nath, J. Wells, D. Conrad, X. Soler, A. Yen, A. Comellas, K. Hoth, J. Newell, B. Thompson, M. Han, E. Kazerooni, W. Labaki, C. Galban, D. Vummidi, J. Billings, A. Begnaud, T. Allen, F. Sciurba, J. Bon, D. Chandra and J. Weissfeld, "Pulmonary Arterial Pruning and Longitudinal Change in Percent Emphysema and Lung Function", Chest, 2021;160:470-480.
   Abstract DOI PMID Cited by ~10
5. N. Lessmann, C. Sánchez, L. Beenen, L. Boulogne, M. Brink, E. Calli, J. Charbonnier, T. Dofferhoff, W. van Everdingen, P. Gerke, B. Geurts, H. Gietema, M. Groeneveld, L. van Harten, N. Hendrix, W. Hendrix, H. Huisman, I. Isgum, C. Jacobs, R. Kluge, M. Kok, J. Krdzalic, B. Lassen-Schmidt, K. van Leeuwen, J. Meakin, M. Overkamp, T. van Rees Vellinga, E. van Rikxoort, R. Samperna, C. Schaefer-Prokop, S. Schalekamp, E. Scholten, C. Sital, L. Stöger, J. Teuwen, K. Vaidhya Venkadesh, C. de Vente, M. Vermaat, W. Xie, B. de Wilde, M. Prokop and B. van Ginneken, "Automated Assessment of COVID-19 Reporting and Data System and Chest CT Severity Scores in Patients Suspected of Having COVID-19 Using Artificial Intelligence", Radiology, 2021;298(1):E18-E28.
   Abstract DOI PMID Algorithm Download Cited by ~112
6. W. Xie, C. Jacobs, J. Charbonnier and B. van Ginneken, "Relational Modeling for Robust and Efficient Pulmonary Lobe Segmentation in CT Scans", IEEE Transactions on Medical Imaging, 2020;39(8):2664-2675.
   Abstract DOI PMID Algorithm Download Cited by ~100
7. J. Charbonnier, E. Pompe, C. Moore, S. Humphries, B. van Ginneken, B. Make, E. Regan, J. Crapo, E. van Rikxoort and D. Lynch, "Airway wall thickening on CT: Relation to smoking status and severity of COPD", Respiratory Medicine, 2019;146:36-41.
   Abstract DOI PMID Download Cited by ~49
8. J. Charbonnier, K. Chung, E. Scholten, E. van Rikxoort, C. Jacobs, N. Sverzellati, M. Silva, U. Pastorino, B. van Ginneken and F. Ciompi, "Automatic segmentation of the solid core and enclosed vessels in subsolid pulmonary nodules", Scientific Reports, 2018;8(1):646.
   Abstract DOI PMID Download Cited by ~16
9. J. Charbonnier, E. van Rikxoort, A. Setio, C. Schaefer-Prokop, B. van Ginneken and F. Ciompi, "Improving Airway Segmentation in Computed Tomography using Leak Detection with Convolutional Networks", Medical Image Analysis, 2017;36:52-60.
   Abstract DOI PMID Cited by ~87

Preprints

1. W. Xie, C. Jacobs, J. Charbonnier and B. van Ginneken, "Structure and position-aware graph neural network for airway labeling", arXiv:2201.04532, 2022.
   Abstract DOI arXiv Cited by ~5

Abstracts

1. A. Schreuder, C. Schaefer-Prokop, E. Scholten, D. Lynch, J. Charbonnier and C. Jacobs, "Perifissural nodule count as a biomarker for COPD GOLD stages and emphysema measurements?", European Societies of Cardiovascular Radiology and Thoracic Imaging Joint Meeting, 2018.
   Abstract

PhD theses

1. J. Charbonnier, "Segmentation & quantification of airways and blood vessels in chest CT", PhD thesis, 2017.
   Abstract Url