Publications of Carlijn Lems

2026

Preprints

  1. C. Lems, S. Moonemans, N. Klubíčková, B. Brattoli, T. Lee, S. Kim, V. Vilaplana, L. Pons, S. Hochman, M. Suárez-Franck, P. Fernandez, J. Drachneris, D. Petroska, R. Augulis, A. Laurinavicius, D. Oliveira, D. Montezuma, A. Bouwmeester, D. van Midden, A. Vos, S. Vos, J. van Ipenburg, M. Balkenhol, K. Winkler, I. Nagtegaal, K. Hebeda, U. Flucke, K. Grünberg, J. Skopal, B. Chohan, J. Temprana-Salvador, E. Munari, L. Cima, G. Querzoli, Y. Belisario, J. Faber, G. van Leenders, J. von der Thüsen, L. Brosens, R. de Krijger, P. Wesseling, S. Florquin, M. Maniewski, A. Kowalewski, R. Barna, D. Tiniakos, J. Gros, R. Donders, J. Maurits, M. Lu, C. Chen, F. Mahmood, J. van der Laak, N. Khalili, F. Meeuwsen and F. Ciompi, "DALPHIN: Benchmarking Digital Pathology AI Copilots Against Pathologists on an Open Multicentric Dataset", arXiv:2605.03544, 2026.
    Abstract DOI arXiv

2025

Preprints

  1. C. Lems, L. Tessier, J. Bokhorst, M. van Rijthoven, W. Aswolinskiy, M. Pozzi, N. Klubickova, S. Dintzis, M. Campora, M. Balkenhol, P. Bult, J. Spronck, T. Detone, M. Barbareschi, E. Munari, G. Bogina, J. Wesseling, E. Lips, F. Ciompi, F. Meeuwsen and J. van der Laak, "A Multicentric Dataset for Training and Benchmarking Breast Cancer Segmentation in H&E Slides", arXiv:2510.02037, 2025.
    Abstract DOI arXiv

Papers in conference proceedings

  1. C. Lems, N. Klubíčková, B. Brattoli, T. Lee, S. Kim, V. Besler, P. Fernandez, L. Pons, A. Laurinavicius, J. Drachneris, D. Montezuma, D. Oliveira, S. Vos, M. Balkenhol, J. van Ipenburg, A. Vos, M. Poceviciute, N. Khalili and F. Ciompi, "Towards a multicentric open DigitAL PatHology assIstant beNchmark: Initial Results from the DALPHIN Study", Laboratory Investigation, 2025;105:103609.
    DOI

2024

Papers in conference proceedings

  1. C. Lems, D. Geijs, J. Bokhorst, M. Sülter, L. van Eekelen and F. Ciompi, "Color Deconvolution for Color-Agnostic and Cross-Modality Analysis of Immunohistochemistry Whole-Slide Images with Deep Learning", 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024:1-4.
    DOI