Publications of Marina D'Amato

all all years 2025 2024 2023 2022

Papers in international journals

  1. M. Tran, P. Schmidle, R. Guo, S. Wagner, V. Koch, V. Lupperger, B. Novotny, D. Murphree, H. Hardway, M. D'Amato, J. Lefkes, D. Geijs, A. Feuchtinger, A. Böhner, R. Kaczmarczyk, T. Biedermann, A. Amir, A. Mooyaart, F. Ciompi, G. Litjens, C. Wang, N. Comfere, K. Eyerich, S. Braun, C. Marr and T. Peng, "Generating dermatopathology reports from gigapixel whole slide images with HistoGPT", Nature Communications, 2025;16.
    Abstract DOI PMID
  2. J.S. Bosma, K. Dercksen, L. Builtjes, R. André, C. Roest, S. Fransen, C. Noordman, M. Navarro-Padilla, J. Lefkes, N. Alves, M. de Grauw, L. van Eekelen, J. Spronck, M. Schuurmans, B. de Wilde, W. Hendrix, W. Aswolinskiy, A. Saha, J. Twilt, D. Geijs, J. Veltman, D. Yakar, M. de Rooij, F. Ciompi, A. Hering, J. Geerdink, H. Huisman, O. behalf of the consortium, M. de Grauw, L. van Eekelen, B. de Wilde, Q. van Lohuizen, M. Stegeman, K. Rutten, I. Smit, G. Stultiens, C. Overduin, M. Rutten, E. Scholten, R. van der Post, K. Grünberg, S. Vos, E. Taken, I. Nagtegaal, A. Mickan, M. Groeneveld, P. Gerke, J. Meakin, M. Looijen-Salamon, T. de Haas, F. Hoitsma, M. D'Amato and M. de Rooij, "The DRAGON benchmark for clinical NLP", npj Digital Medicine, 2025;8.
    Abstract DOI PMID
  3. A. Jurgas, M. Wodzinski, M. D'Amato, J. van der Laak, M. Atzori and H. Müller, "Improving quality control of whole slide images by explicit artifact augmentation", Scientific Reports, 2024;14.
    Abstract DOI PMID
  4. M. D'Amato, P. Szostak and B. Torben-Nielsen, "A Comparison Between Single- and Multi-Scale Approaches for Classification of Histopathology Images", Frontiers in Public Health, 2022;10.
    Abstract DOI

Preprints

  1. M. D'Amato, J. van der Laak and F. Ciompi, ""No negatives needed": weakly-supervised regression for interpretable tumor detection in whole-slide histopathology images", arXiv:2502.21109, 2025.
    Abstract DOI arXiv

Papers in conference proceedings

  1. J. Lefkes, M. D'Amato, S. Sun, G. Litjens and F. Ciompi, "Large Language Models Automate Diagnostic Conclusions Generation from Microscopic Descriptions in Multiple Cancer Types", Laboratory Investigation, 2025;105:103608.
    Abstract DOI
  2. N. Contreras, C. Grisi, W. Aswolinskiy, S. Vatrano, F. Fraggetta, I. Nagtegaal, M. D'Amato and F. Ciompi, "Benchmarking Hierarchical Image Pyramid Transformer for the Classification of Colon Biopsies and Polyps Histopathology Images", 2024 IEEE International Symposium on Biomedical Imaging (ISBI), 2024:1-4.
    Abstract DOI

Abstracts

  1. M. D'Amato, A. Boden, P. van Diest, N. Stathonikos, H. Hoefling, F. Versaevel, G. Litjens, F. Ciompi and J. van der Laak, "Automated Quality Control in Histopathology through Artifact Segmentation", European Congress on Digital Pathology, 2024.
    Abstract
  2. M. D'Amato, M. Balkenhol, M. van Rijthoven, J. van der Laak and F. Ciompi, "On the robustness of regressing tumor percentage as an explainable detector in histopathology whole-slide images", Medical Imaging with Deep Learning, 2023.
    Abstract