Publications

2024

Papers in international journals

  1. R. Leon-Ferre, J. Carter, D. Zahrieh, J. Sinnwell, R. Salgado, V. Suman, D. Hillman, J. Boughey, K. Kalari, F. Couch, J. Ingle, M. Balkenhol, F. Ciompi, J. van der Laak and M. Goetz, "Automated mitotic spindle hotspot counts are highly associated with clinical outcomes in systemically untreated early-stage triple-negative breast cancer", npj Breast Cancer, 2024;10.
    Abstract DOI PMID
  2. D. Peeters, N. Alves, K. Venkadesh, R. Dinnessen, Z. Saghir, E. Scholten, C. Schaefer-Prokop, R. Vliegenthart, M. Prokop and C. Jacobs, "Enhancing a deep learning model for pulmonary nodule malignancy risk estimation in chest CT with uncertainty estimation", European Radiology, 2024.
    Abstract DOI PMID
  3. N. van Nistelrooij, K. Ghoul, T. Xi, A. Saha, S. Kempers, M. Cenci, B. Loomans, T. Flügge, B. van Ginneken and S. Vinayahalingam, "Combining public datasets for automated tooth assessment in panoramic radiographs", BMC Oral Health, 2024;24.
    Abstract DOI PMID
  4. L. van Eekelen, J. Spronck, M. Looijen-Salamon, S. Vos, E. Munari, I. Girolami, A. Eccher, B. Acs, C. Boyaci, G. de Souza, M. Demirel-Andishmand, L. Meesters, D. Zegers, L. van der Woude, W. Theelen, M. van den Heuvel, K. Grünberg, B. van Ginneken, J. van der Laak and F. Ciompi, "Comparing deep learning and pathologist quantification of cell-level PD-L1 expression in non-small cell lung cancer whole-slide images", Scientific Reports, 2024;14.
    Abstract DOI PMID
  5. U. Mahmood, A. Shukla-Dave, H. Chan, K. Drukker, R. Samala, Q. Chen, D. Vergara, H. Greenspan, N. Petrick, B. Sahiner, Z. Huo, R. Summers, K. Cha, G. Tourassi, T. Deserno, K. Grizzard, J. Näppi, H. Yoshida, D. Regge, R. Mazurchuk, K. Suzuki, L. Morra, H. Huisman, S. Armato and L. Hadjiiski, "Artificial intelligence in medicine: mitigating risks and maximizing benefits via quality assurance, quality control, and acceptance testing", BJR|Artificial Intelligence, 2024;1.
    Abstract DOI PMID
  6. J. van der Graaf, M. van Hooff, C. Buckens, M. Rutten, J. van Susante, R. Kroeze, M. de Kleuver, B. van Ginneken and N. Lessmann, "Lumbar spine segmentation in MR images: a dataset and a public benchmark", Scientific Data, 2024;11(1):264.
    Abstract DOI PMID Cited by ~5
  7. J. van der Graaf, M. van Hooff, B. van Ginneken, M. Huisman, M. Rutten, D. Lamers, N. Lessmann and M. de Kleuver, "Development and validation of AI-based automatic measurement of coronal Cobb angles in degenerative scoliosis using sagittal lumbar MRI", European Radiology, 2024:1-10.
    Abstract DOI PMID
  8. A. Vos, L. Pijnenborg, S. van Vliet, L. Kodach, F. Ciompi, R. van der Post, F. Simmer and I. Nagtegaal, "Biological background of colorectal polyps and carcinomas with heterotopic ossification: A national study and literature review", Human Pathology, 2024;145:34-41.
    Abstract DOI PMID
  9. L. Maier-Hein, A. Reinke, P. Godau, M. Tizabi, F. Buettner, E. Christodoulou, B. Glocker, F. Isensee, J. Kleesiek, M. Kozubek, M. Reyes, M. Riegler, M. Wiesenfarth, A. Kavur, C. Sudre, M. Baumgartner, M. Eisenmann, D. Heckmann-Nötzel, T. Rädsch, L. Acion, M. Antonelli, T. Arbel, S. Bakas, A. Benis, M. Blaschko, M. Cardoso, V. Cheplygina, B. Cimini, G. Collins, K. Farahani, L. Ferrer, A. Galdran, B. van Ginneken, R. Haase, D. Hashimoto, M. Hoffman, M. Huisman, P. Jannin, C. Kahn, D. Kainmueller, B. Kainz, A. Karargyris, A. Karthikesalingam, F. Kofler, A. Kopp-Schneider, A. Kreshuk, T. Kurc, B. Landman, G. Litjens, A. Madani, K. Maier-Hein, A. Martel, P. Mattson, E. Meijering, B. Menze, K. Moons, H. Müller, B. Nichyporuk, F. Nickel, J. Petersen, N. Rajpoot, N. Rieke, J. Saez-Rodriguez, C. Sánchez, S. Shetty, M. van Smeden, R. Summers, A. Taha, A. Tiulpin, S. Tsaftaris, B. Van Calster, G. Varoquaux and P. Jäger, "Metrics reloaded: recommendations for image analysis validation", Nature Methods, 2024;21:195-212.
    Abstract DOI PMID Cited by ~50
  10. A. Reinke, M. Tizabi, M. Baumgartner, M. Eisenmann, D. Heckmann-Nötzel, A. Kavur, T. Rädsch, C. Sudre, L. Acion, M. Antonelli, T. Arbel, S. Bakas, A. Benis, F. Buettner, M. Cardoso, V. Cheplygina, J. Chen, E. Christodoulou, B. Cimini, K. Farahani, L. Ferrer, A. Galdran, B. van Ginneken, B. Glocker, P. Godau, D. Hashimoto, M. Hoffman, M. Huisman, F. Isensee, P. Jannin, C. Kahn, D. Kainmueller, B. Kainz, A. Karargyris, J. Kleesiek, F. Kofler, T. Kooi, A. Kopp-Schneider, M. Kozubek, A. Kreshuk, T. Kurc, B. Landman, G. Litjens, A. Madani, K. Maier-Hein, A. Martel, E. Meijering, B. Menze, K. Moons, H. Müller, B. Nichyporuk, F. Nickel, J. Petersen, S. Rafelski, N. Rajpoot, M. Reyes, M. Riegler, N. Rieke, J. Saez-Rodriguez, C. Sánchez, S. Shetty, R. Summers, A. Taha, A. Tiulpin, S. Tsaftaris, B. Van Calster, G. Varoquaux, Z. Yaniv, P. Jäger and L. Maier-Hein, "Understanding metric-related pitfalls in image analysis validation", Nature Methods, 2024;21:182-194.
    Abstract DOI PMID Cited by ~17
  11. T. Perik, N. Alves, J. Hermans and H. Huisman, "Automated Quantitative Analysis of CT Perfusion to Classify Vascular Phenotypes of Pancreatic Ductal Adenocarcinoma", Cancer, 2024;16(3):577.
    Abstract DOI PMID
  12. L. Boulogne, J. Charbonnier, C. Jacobs, E. van der Heijden and B. van Ginneken, "Estimating lung function from computed tomography at the patient and lobe level using machine learning", Medical Physics, 2024.
    Abstract DOI PMID
  13. E. Chelebian, C. Avenel, F. Ciompi and C. Wählby, "DEPICTER: Deep representation clustering for histology annotation", Computers in Biology and Medicine, 2024;170:108026.
    Abstract DOI PMID
  14. B. Russell, K. Beyer, A. Lawlor, M. Roobol, L. Venderbos, S. Remmers, E. Briers, S. MacLennan, S. MacLennan, M. Omar, M. Van Hemelrijck, E. Smith, J. N'Dow, K. Plass, M. Ribal, N. Mottet, R. Shepherd, T. Abbott, K. Mastris, L. Moris, M. Lardas, T. den Van Broeck, P. Willemse, N. Fossati, K. Pang, R. Campi, I. Greco, M. Gacci, S. Serni, A. Bjartell, R. Lonnerbro, A. Briganti, D. Crosti, R. Garzonio, G. Gandaglia, M. Faticoni, G. office, C. Bangma, M. Jongerden, D. Tilki, A. Auvinen, T. Murtola, T. Visakorpi, K. Talala, T. Tammela, A. Siltari, S. Lejeune, L. Colette, S. Caputova, D. Poli, S. Byrne, L. Fialho, A. Rowland, N. Tapela, N. Di Flora, K. Apostolidis, V. Lemair, B. De Meulder, C. Auffray, N. Taibi, A. Hijazy, A. Saporta, K. Sun, S. Power, N. Zounemat Kermani, K. van Bochove, A. Tafreshiha, C. Bernini, D. Horgan, L. Fullwood, M. Holtorf, D. Lancet, G. Bernstein, S. Tripathee, M. Wirth, M. Froehner, B. Brenner, A. Borkowetz, C. Thomas, F. Horn, K. Reiche, M. Kreuz, A. Josefsson, D. Gasi Tandefelt, J. Hugosson, J. Schalken, H. Huisman, T. Hofmarcher, P. Lindgren, E. Andersson, A. Fridhammar, M. Tames Grijalva, S. Evans-Axelsson, F. Verholen, J. Zong, J. Butler-Ransohoff, T. Williamson, R. Waldeck, A. Bruno, E. Nevedomskaya, S. Fatoba, N. Constantinovici, C. Steinbeisser, M. Maass, P. Torremante, E. Dochy, F. Pisa, M. Voss, K. Papineni, J. Wang-silvanto, R. Snijder, X. Wang, M. Lambrecht, R. Wolfinger, S. Eid, S. Palanisamy, S. Haque, L. Antoni, A. Servan, K. Pascoe, P. Robinson, J. Lencart, B. Jaton, H. Turunen, O. Kilkku, P. Pohjanjousi, O. Voima, L. Nevalaita, K. Punakivi, S. Seager, S. Ratwani, K. Grzeslak, J. Brash, E. Longden-Chapman, D. Burke, M. Licour, S. Payne, A. Yong, F. Lujan, S. Le Mare, J. Hendrich, M. Bussmann, Juckeland, Kotik, D. Poli and C. Reich, "Survivorship Data in Prostate Cancer: Where Are We and Where Do We Need To Be?", European Urology Open Science, 2024;59:27-29.
    Abstract DOI PMID
  15. C. Jacobs, "Decoding pulmonary nodules: can machine learning enhance malignancy risk stratification?", Thorax, 2024.
    Abstract DOI PMID
  16. K. Faryna, J. van der Laak and G. Litjens, "Automatic data augmentation to improve generalization of deep learning in H&E stained histopathology", Computers in Biology and Medicine, 2024;170:108018.
    Abstract DOI PMID
  17. D. Schouten, J. van der Laak, B. van Ginneken and G. Litjens, "Full resolution reconstruction of whole-mount sections from digitized individual tissue fragments", Scientific Reports, 2024;14.
    Abstract DOI PMID
  18. C. Jahangir, D. Page, G. Broeckx, C. Gonzalez, C. Burke, C. Murphy, J. Reis-Filho, A. Ly, P. Harms, R. Gupta, M. Vieth, A. Hida, M. Kahila, Z. Kos, P. van Diest, S. Verbandt, J. Thagaard, R. Khiroya, K. Abduljabbar, G. Acosta Haab, B. Acs, S. Adams, J. Almeida, I. Alvarado-Cabrero, F. Azmoudeh-Ardalan, S. Badve, N. Baharun, E. Bellolio, V. Bheemaraju, K. Blenman, L. Mendonça Botinelly Fujimoto, O. Burgues, A. Chardas, M. Cheang, F. Ciompi, L. Cooper, A. Coosemans, G. Corredor, F. Dantas Portela, F. Deman, S. Demaria, S. Dudgeon, M. Elghazawy, C. Fernandez-Martín, S. Fineberg, S. Fox, J. Giltnane, S. Gnjatic, P. Gonzalez-Ericsson, A. Grigoriadis, N. Halama, M. Hanna, A. Harbhajanka, S. Hart, J. Hartman, S. Hewitt, H. Horlings, Z. Husain, S. Irshad, E. Janssen, T. Kataoka, K. Kawaguchi, A. Khramtsov, U. Kiraz, P. Kirtani, L. Kodach, K. Korski, G. Akturk, E. Scott, A. Kovács, A. L\aenkholm , C. Lang-Schwarz, D. Larsimont, J. Lennerz, M. Lerousseau, X. Li, A. Madabhushi, S. Maley, V. Manur Narasimhamurthy, D. Marks, E. McDonald, R. Mehrotra, S. Michiels, D. Kharidehal, F. Minhas, S. Mittal, D. Moore, S. Mushtaq, H. Nighat, T. Papathomas, F. Penault-Llorca, R. Perera, C. Pinard, J. Pinto-Cardenas, G. Pruneri, L. Pusztai, N. Rajpoot, B. Rapoport, T. Rau, J. Ribeiro, D. Rimm, A. Vincent-Salomon, J. Saltz, S. Sayed, E. Hytopoulos, S. Mahon, K. Siziopikou, C. Sotiriou, A. Stenzinger, M. Sughayer, D. Sur, F. Symmans, S. Tanaka, T. Taxter, S. Tejpar, J. Teuwen, E. Thompson, T. Tramm, W. Tran, J. van der Laak, G. Verghese, G. Viale, N. Wahab, T. Walter, Y. Waumans, H. Wen, W. Yang, Y. Yuan, J. Bartlett, S. Loibl, C. Denkert, P. Savas, S. Loi, E. Specht Stovgaard, R. Salgado, W. Gallagher and A. Rahman, "Image-based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno-oncology Biomarker Working Group on Breast Cancer", The Journal of Pathology, 2024;262:271-288.
    Abstract DOI PMID
  19. J. Linmans, G. Raya, J. van der Laak and G. Litjens, "Diffusion models for out-of-distribution detection in digital pathology", Medical Image Analysis, 2024;93:103088.
    Abstract DOI PMID Cited by ~4
  20. D. Geijs, S. Dooper, W. Aswolinskiy, L. Hillen, A. Amir and G. Litjens, "Detection and subtyping of basal cell carcinoma in whole-slide histopathology using weakly-supervised learning", Medical Image Analysis, 2024;93:103063.
    Abstract DOI PMID
  21. K. van Leeuwen, S. Schalekamp, M. Rutten, M. Huisman, C. Schaefer-Prokop, M. de Rooij, B. van Ginneken, B. Maresch, B. Geurts, C. van Dijke, E. Laupman-Koedam, E. Hulleman, E. Verhoeff, E. Meys, F. Mohamed Hoesein, F. ter Brugge, F. van Hoorn, F. van der Wel, I. van den Berk, J. Luyendijk, J. Meakin, J. Habets, J. Verbeke, J. Nederend, K. Meys, L. Deden, L. Langezaal, M. Nasrollah, M. Meij, M. Boomsma, M. Vermeulen, M. Vestering, O. Vijlbrief, P. Algra, S. Algra, S. Bollen, T. Samson, Y. von Brucken Fock, B. Maresch, B. Geurts, C. van Dijke, E. Laupman-Koedam, E. Hulleman, E. Verhoeff, E. Meys, F. Mohamed Hoesein, F. ter Brugge, F. van Hoorn, F. van der Wel, I. van den Berk, J. Luyendijk, J. Meakin, J. Habets, J. Verbeke, J. Nederend, K. Meys, L. Deden, L. Langezaal, M. Nasrollah, M. Meij, M. Boomsma, M. Vermeulen, M. Vestering, O. Vijlbrief, P. Algra, S. Algra, S. Bollen, T. Samson, Y. von Brucken Fock and F. the Group, "Comparison of Commercial AI Software Performance for Radiograph Lung Nodule Detection and Bone Age Prediction", Radiology, 2024;310.
    Abstract DOI PMID Cited by ~3
  22. M. van Rijthoven, S. Obahor, F. Pagliarulo, V. den Maries, P. Schraml, H. Moch, J. van der Laak, F. Ciompi and K. Silina, "Multi-resolution deep learning characterizes tertiary lymphoid structures and their prognostic relevance in solid tumors", Communications Medicine, 2024.
    Abstract DOI PMID Code Algorithm Cited by ~1
  23. S. Vermorgen, T. Gelton, P. Bult, H. Kusters-Vandevelde, J. Hausnerová, K. de Van Vijver, B. Davidson, I. Stefansson, L. Kooreman, A. Qerimi, J. Huvila, B. Gilks, M. Shahi, S. Zomer, C. Bartosch, J. Pijnenborg, J. Bulten, F. Ciompi and M. Simons, "Endometrial Pipelle Biopsy Computer-Aided Diagnosis: A Feasibility Study", Modern Pathology, 2024;37:100417.
    Abstract DOI PMID
  24. G. Solé-Guardia, M. Luijten, B. Geenen, J. Claassen, G. Litjens, F. de Leeuw, M. Wiesmann and A. Kiliaan, "Three-dimensional identification of microvascular pathology and neurovascular inflammation in severe white matter hyperintensity: a case report", Scientific Reports, 2024;14.
    Abstract DOI

Preprints

  1. E. Sogancioglu, B. van Ginneken, F. Behrendt, M. Bengs, A. Schlaefer, M. Radu, D. Xu, K. Sheng, F. Scalzo, E. Marcus, S. Papa, J. Teuwen, E. Scholten, S. Schalekamp, N. Hendrix, C. Jacobs, W. Hendrix, C. Sánchez and K. Murphy, "Nodule detection and generation on chest X-rays: NODE21 Challenge", arXiv:2401.02192, 2024.
    Abstract DOI PMID arXiv

Abstracts

  1. R. Dinnessen, K. Venkadesh, D. Peeters, H. Gietema, E. Scholten, C. Schaefer-Prokop and C. Jacobs, "External validation of an AI algorithm for pulmonary nodule malignancy risk estimation on a dataset of incidentally detected pulmonary nodules", European Congress of Radiology, 2024.
    Abstract
  2. F. van der Graaf, N. Antonissen, Z. Saghir, M. Prokop and C. Jacobs, "External validation of the Sybil risk model as a tool to identify low-risk individuals eligible for biennial lung cancer screening", European Congress of Radiology, 2024.
    Abstract
  3. B. Obreja, K. Venkadesh, W. Hendrix, Z. Saghir, M. Prokop and C. Jacobs, "Deep Learning for estimating pulmonary nodule malignancy risk: How much data does AI need to reach radiologist level performance?", European Congress of Radiology, 2024.
    Abstract

Other publications

  1. T. Kohlbrandt, J. Moltz, S. Heldmann, A. Hering and J. Lellmann, "Joint Learning of Image Registration and Change Detection for Lung CT Images", Bildverarbeitung fur die Medizin 2024, 2024:46-51.
    Abstract DOI
  2. F. Falta, C. Gro\ssbr öhmer, A. Hering, A. Bigalke and M. Heinrich, "Abstract: Combined 3D Dataset for CT- and Point Cloud-based Intra-patient Lung Registration Lung250M-4B", Bildverarbeitung fur die Medizin 2024, 2024:53-53.
    Abstract DOI