Publications of Keelin Murphy

Papers in international journals

  1. S. Schalekamp, K. van Leeuwen, E. Calli, K. Murphy, M. Rutten, B. Geurts, L. Peters-Bax, B. van Ginneken and M. Prokop, "Performance of AI to exclude normal chest radiographs to reduce radiologists' workload", European Radiology, 2024.
    Abstract DOI PMID
  2. A. Scott, M. Limbada, T. Perumal, S. Jaumdally, A. Kotze, C. van der Merwe, M. Cheeba, D. Milimo, K. Murphy, B. van Ginneken, M. de Kock, R. Warren, P. Gina, J. Swanepoel, L. Kühn, S. Oelofse, A. Pooran, A. Esmail, H. Ayles and K. Dheda, "Integrating molecular and radiological screening tools during community-based active case-finding for tuberculosis and COVID-19 in southern Africa", International Journal of Infectious Diseases, 2024:107081.
    Abstract DOI PMID
  3. F. Vanobberghen, A. Keter, B. Jacobs, T. Glass, L. Lynen, I. Law, K. Murphy, B. van Ginneken, I. Ayakaka, A. van Heerden, L. Maama and K. Reither, "Computer-aided detection thresholds for digital chest radiography interpretation in tuberculosis diagnostic algorithms", ERJ Open Research, 2023;10:00508-2023.
    Abstract DOI PMID
  4. K. Murphy, J. Muhairwe, S. Schalekamp, B. van Ginneken, I. Ayakaka, K. Mashaete, B. Katende, A. van Heerden, S. Bosman, T. Madonsela, L. Gonzalez Fernandez, A. Signorell, M. Bresser, K. Reither and T. Glass, "COVID-19 screening in low resource settings using artificial intelligence for chest radiographs and point-of-care blood tests", Scientific Reports, 2023;13.
    Abstract DOI PMID
  5. N. Glaser, S. Bosman, T. Madonsela, A. van Heerden, K. Mashaete, B. Katende, I. Ayakaka, K. Murphy, A. Signorell, L. Lynen, J. Bremerich and K. Reither, "Incidental radiological findings during clinical tuberculosis screening in Lesotho and South Africa: a case series", Journal of Medical Case Reports, 2023;17.
    Abstract DOI PMID
  6. B. Katende, M. Bresser, M. Kamele, L. Chere, M. Tlahali, R. Erhardt, J. Muhairwe, I. Ayakaka, T. Glass, M. Ruhwald, B. van Ginneken, K. Murphy, M. de Vos, A. Amstutz, M. Mareka, S. Mooko, K. Reither and L. González Fernández, "Impact of a multi-disease integrated screening and diagnostic model for COVID-19, TB, and HIV in Lesotho", PLOS Global Public Health, 2023;3:e0001488.
    Abstract DOI PMID Cited by ~2
  7. M. Palmer, J. Seddon, M. van der Zalm, A. Hesseling, P. Goussard, H. Schaaf, J. Morrison, B. van Ginneken, J. Melendez, E. Walters and K. Murphy, "Optimising computer aided detection to identify intra-thoracic tuberculosis on chest x-ray in South African children", PLOS Global Public Health, 2023;3:e0001799.
    Abstract DOI PMID Cited by ~2
  8. E. Calli, B. Van Ginneken, E. Sogancioglu and K. Murphy, "FRODO: An in-depth analysis of a system to reject outlier samples from a trained neural network.", IEEE transactions on medical imaging, 2022;PP.
    Abstract DOI PMID Cited by ~5
  9. E. Calli, K. Murphy, E. Scholten, S. Schalekamp and B. van Ginneken, "Explainable emphysema detection on chest radiographs with deep learning", PLoS One, 2022;17(7):e0267539.
    Abstract DOI PMID Cited by ~2
  10. E. Sogancioglu, K. Murphy, E. Th Scholten, L. Boulogne, M. Prokop and B. van Ginneken, "Automated estimation of total lung volume using chest radiographs and deep learning", Medical Physics, 2022;49(7):4466-4477.
    Abstract DOI PMID Cited by ~5
  11. E. Calli, E. Sogancioglu, B. van Ginneken, K. van Leeuwen and K. Murphy, "Deep learning for chest X-ray analysis: A survey", Medical Image Analysis, 2021;72:102125.
    Abstract DOI PMID Download Cited by ~211
  12. E. Calli, K. Murphy, S. Kurstjens, T. Samson, R. Herpers, H. Smits, M. Rutten and B. van Ginneken, "Deep learning with robustness to missing data: A novel approach to the detection of COVID-19", PLoS One, 2021;16(7):e0255301.
    Abstract DOI Download Cited by ~3
  13. K. Murphy, H. Smits, A. Knoops, M. Korst, T. Samson, E. Scholten, S. Schalekamp, C. Schaefer-Prokop, R. Philipsen, A. Meijers, J. Melendez, B. van Ginneken and M. Rutten, "COVID-19 on the Chest Radiograph: A Multi-Reader Evaluation of an AI System", Radiology, 2020;296:E166-E172.
    Abstract DOI PMID Cited by ~154
  14. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", Scientific Reports, 2020;10:5492.
    Abstract DOI PMID arXiv Cited by ~113
  15. E. Sogancioglu, K. Murphy, E. Calli, E. Scholten, S. Schalekamp and B. Van Ginneken, "Cardiomegaly Detection on Chest Radiographs: Segmentation Versus Classification", IEEE Access, 2020;8:94631-94642.
    Abstract DOI Cited by ~27
  16. C. Jacobs, E. van Rikxoort, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology, 2016;26:2139-2147.
    Abstract DOI PMID Cited by ~105
  17. S. Muenzing, B. van Ginneken, K. Murphy and J. Pluim, "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis, 2012;16:1521-1531.
    Abstract DOI PMID Download Cited by ~52
  18. K. Murphy, J. Pluim, E. van Rikxoort, P. de Jong, B. de Hoop, H. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken, "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics, 2012;39(3):1650-1662.
    Abstract DOI PMID Download Cited by ~49
  19. O. Mets, K. Murphy, P. Zanen, H. Gietema, J. Lammers, B. van Ginneken, M. Prokop and P. de Jong, "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology, 2012;22(1):120-128.
    Abstract DOI PMID Cited by ~70
  20. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M. Heinrich, J. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J. McClelland, S. Ourselin, S. Muenzing, M. Viergever, D. Nigris, D. Collins, T. Arbel, M. Peroni, R. Li, G. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J. Gee, M. Staring, S. Klein, B. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J. Pluim, "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging, 2011;31(11):1901-1920.
    Abstract DOI PMID Download Cited by ~452
  21. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B. de Hoop, M. Viergever and J. Pluim, "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis, 2011;15(1):71-84.
    Abstract DOI PMID Cited by ~135
  22. B. van Ginneken, S. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A. Schilham, A. Retico, M. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S. Cheran, E. Torres and M. Prokop, "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis, 2010;14:707-722.
    Abstract DOI PMID Cited by ~294
  23. Y. Arzhaeva, M. Prokop, K. Murphy, E. van Rikxoort, P. de Jong, H. Gietema, M. Viergever and B. van Ginneken, "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics, 2010;37(1):63-73.
    Abstract DOI PMID Download Cited by ~24
  24. B. de Hoop, H. Gietema, S. van de Vorst, K. Murphy, R. van Klaveren and M. Prokop, "Pulmonary ground-glass nodules: increase in mass as an early indicator of growth", Radiology, 2010;255(1):199-206.
    Abstract DOI PMID Cited by ~199
  25. K. Murphy, B. van Ginneken, A. Schilham, B. de Hoop, H. Gietema and M. Prokop, "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis, 2009;13(5):757-770.
    Abstract DOI PMID Download Cited by ~323

Preprints

  1. E. Sogancioglu, B. van Ginneken, F. Behrendt, M. Bengs, A. Schlaefer, M. Radu, D. Xu, K. Sheng, F. Scalzo, E. Marcus, S. Papa, J. Teuwen, E. Scholten, S. Schalekamp, N. Hendrix, C. Jacobs, W. Hendrix, C. Sánchez and K. Murphy, "Nodule detection and generation on chest X-rays: NODE21 Challenge", arXiv:2401.02192, 2024.
    Abstract DOI PMID arXiv
  2. A. Hering, L. Hansen, T. Mok, A. Chung, H. Siebert, S. Hager, A. Lange, S. Kuckertz, S. Heldmann, W. Shao, S. Vesal, M. Rusu, G. Sonn, T. Estienne, M. Vakalopoulou, L. Han, Y. Huang, P. Yap, M. Brudfors, Y. Balbastre, S. Joutard, M. Modat, G. Lifshitz, D. Raviv, J. Lv, Q. Li, V. Jaouen, D. Visvikis, C. Fourcade, M. Rubeaux, W. Pan, Z. Xu, B. Jian, F. Benetti, M. Wodzinski, N. Gunnarsson, J. Sjolund, D. Grzech, H. Qiu, Z. Li, A. Thorley, J. Duan, C. Grossbrohmer, A. Hoopes, I. Reinertsen, Y. Xiao, B. Landman, Y. Huo, K. Murphy, N. Lessmann, B. van Ginneken, A. Dalca and M. Heinrich, "Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning", arXiv preprint arXiv:2112.04489, 2021.
    Abstract arXiv Cited by ~86
  3. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", arXiv:1903.03349, 2019.
    Abstract arXiv Cited by ~113

Papers in conference proceedings

  1. E. Calli, K. Murphy, E. Sogancioglu and B. van Ginneken, "FRODO: Free rejection of out-of-distribution samples: application to chest x-ray analysis", Medical Imaging with Deep Learning, 2019.
    Abstract Url Cited by ~15
  2. E. Calli, E. Sogancioglu, E. Scholten, K. Murphy and B. van Ginneken, "Handling label noise through model confidence and uncertainty: application to chest radiograph classification", Medical Imaging, 2019(1).
    Abstract DOI Cited by ~17
  3. C. Jacobs, K. Murphy, T. Twellmann, P. de Jong and B. van Ginneken, "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", The Fourth International Workshop on Pulmonary Image Analysis, 2011:177-182.
    Abstract Cited by ~2
  4. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng and J. Pluim, "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", Medical Image Analysis for the Clinic - A Grand Challenge, 2010:11-22.
    Abstract Cited by ~45
  5. S. Muenzing, K. Murphy, B. van Ginneken and J. Pluim, "Automatic detection of registration errors for quality assessment in medical image registration", Medical Imaging, 2009;7259:72590K1-72590K9.
    Abstract DOI Cited by ~10
  6. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J. Pluim, "Evaluation of 4D-CT Lung Registration", Medical Image Computing and Computer-Assisted Intervention, 2009;5761:747-754.
    Abstract DOI Cited by ~82
  7. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J. Pluim, "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", Medical Image Computing and Computer-Assisted Intervention, 2008;5242.
    Abstract DOI PMID Cited by ~86
  8. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring, "Quantitative Assessment of Registration in Thoracic CT", The First International Workshop on Pulmonary Image Analysis, 2008:203-211.
    Abstract Cited by ~3
  9. B. van Ginneken, A. Tan, K. Murphy, B. de Hoop and M. Prokop, "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", Medical Imaging, 2008;6915:69150X1-69150X10.
    Abstract DOI Cited by ~2
  10. K. Murphy, A. Schilham, H. Gietema, M. Prokop and B. van Ginneken, "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", Medical Imaging, 2007;6514:651410-1-651410-12.
    Abstract DOI Cited by ~22

Abstracts

  1. B. van Ginneken, K. Murphy, E. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P. de Jong and H. Gietema, "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", Annual Meeting of the Radiological Society of North America, 2009.
    Abstract Cited by ~3
  2. K. Murphy, B. van Ginneken, J. Pluim, T. Altes, M. Prokop and E. de Lange, "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", Annual Meeting of the Radiological Society of North America, 2009.
    Abstract
  3. B. van Ginneken, B. de Hoop, E. van Rikxoort, K. Murphy and M. Prokop, "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract
  4. K. Murphy, M. Prokop, C. Schaefer-Prokop, H. Gietema, G. Nossent, B. van Ginneken, J. Pluim and Y. Arzhaeva, "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract
  5. K. Murphy, B. van Ginneken, E. van Rikxoort, B. de Hoop, J. Pluim and M. Prokop, "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract Cited by ~1
  6. Y. Arzhaeva, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", Annual Meeting of the Radiological Society of North America, 2007:267.
    Abstract

PhD theses

  1. E. Çallı, "Deep learning methods towards clinically applicable Chest X-ray interpretation systems", PhD thesis, 2023.
    Abstract Url
  2. K. Murphy, "Development and evaluation of automated image analysis techniques in thoracic CT", PhD thesis, 2011.
    Abstract Url

Other publications

  1. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng, "Medical Image Analysis for the Clinic: a Grand Challenge", 2010.
    Abstract Url