Publications of Keelin Murphy

all all years 2023 2022 2021 2020 2019 2016 2012 and before

Papers in international journals

  1. M. Palmer, J. Seddon, M. van der Zalm, A. Hesseling, P. Goussard, H. Schaaf, J. Morrison, B. van Ginneken, J. Melendez, E. Walters and K. Murphy, "Optimising computer aided detection to identify intra-thoracic tuberculosis on chest x-ray in South African children", PLOS Global Public Health, 2023;3:e0001799.
    Abstract DOI
  2. B. Katende, M. Bresser, M. Kamele, L. Chere, M. Tlahali, R. Erhardt, J. Muhairwe, I. Ayakaka, T. Glass, M. Ruhwald, B. van Ginneken, K. Murphy, M. de Vos, A. Amstutz, M. Mareka, S. Mooko, K. Reither and L. González Fernández, "Impact of a multi-disease integrated screening and diagnostic model for COVID-19, TB, and HIV in Lesotho", PLOS Global Public Health, 2023;3:e0001488.
    Abstract DOI
  3. E. Calli, B. Van Ginneken, E. Sogancioglu and K. Murphy, "FRODO: An in-depth analysis of a system to reject outlier samples from a trained neural network.", IEEE transactions on medical imaging, 2022;PP.
    Abstract DOI PMID
  4. E. Calli, K. Murphy, E. Scholten, S. Schalekamp and B. van Ginneken, "Explainable emphysema detection on chest radiographs with deep learning", PLoS One, 2022;17(7):e0267539.
    Abstract DOI PMID
  5. E. Sogancioglu, K. Murphy, E. Th Scholten, L. Boulogne, M. Prokop and B. van Ginneken, "Automated estimation of total lung volume using chest radiographs and deep learning", Medical Physics, 2022;49(7):4466-4477.
    Abstract DOI PMID
  6. E. Calli, E. Sogancioglu, B. van Ginneken, K. van Leeuwen and K. Murphy, "Deep learning for chest X-ray analysis: A survey", Medical Image Analysis, 2021;72:102125.
    Abstract DOI PMID Download
  7. E. Calli, K. Murphy, S. Kurstjens, T. Samson, R. Herpers, H. Smits, M. Rutten and B. van Ginneken, "Deep learning with robustness to missing data: A novel approach to the detection of COVID-19", PLoS One, 2021;16(7):e0255301.
    Abstract DOI Download
  8. K. Murphy, H. Smits, A. Knoops, M. Korst, T. Samson, E. Scholten, S. Schalekamp, C. Schaefer-Prokop, R. Philipsen, A. Meijers, J. Melendez, B. van Ginneken and M. Rutten, "COVID-19 on the Chest Radiograph: A Multi-Reader Evaluation of an AI System", Radiology, 2020;296:E166-E172.
    Abstract DOI PMID Cited by ~12
  9. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", Nature Scientific Reports, 2020;10:5492.
    Abstract DOI PMID arXiv Cited by ~8
  10. E. Sogancioglu, K. Murphy, E. Calli, E. Scholten, S. Schalekamp and B. Van Ginneken, "Cardiomegaly Detection on Chest Radiographs: Segmentation Versus Classification", IEEE Access, 2020;8:94631-94642.
    Abstract DOI
  11. C. Jacobs, E. van Rikxoort, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology, 2016;26:2139-2147.
    Abstract DOI PMID Cited by ~54
  12. S. Muenzing, B. van Ginneken, K. Murphy and J. Pluim, "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis, 2012;16:1521-1531.
    Abstract DOI PMID Cited by ~43 Download
  13. K. Murphy, J. Pluim, E. van Rikxoort, P. de Jong, B. de Hoop, H. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken, "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics, 2012;39(3):1650-1662.
    Abstract DOI PMID Cited by ~49 Download
  14. O. Mets, K. Murphy, P. Zanen, H. Gietema, J. Lammers, B. van Ginneken, M. Prokop and P. de Jong, "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology, 2012;22(1):120-128.
    Abstract DOI PMID Cited by ~70
  15. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M. Heinrich, J. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J. McClelland, S. Ourselin, S. Muenzing, M. Viergever, D. Nigris, D. Collins, T. Arbel, M. Peroni, R. Li, G. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J. Gee, M. Staring, S. Klein, B. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J. Pluim, "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging, 2011;31(11):1901-1920.
    Abstract DOI PMID Cited by ~391 Download
  16. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B. de Hoop, M. Viergever and J. Pluim, "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis, 2011;15(1):71-84.
    Abstract DOI PMID Cited by ~135
  17. B. van Ginneken, S. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A. Schilham, A. Retico, M. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S. Cheran, E. Torres and M. Prokop, "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis, 2010;14:707-722.
    Abstract DOI PMID Cited by ~229
  18. Y. Arzhaeva, M. Prokop, K. Murphy, E. van Rikxoort, P. de Jong, H. Gietema, M. Viergever and B. van Ginneken, "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics, 2010;37(1):63-73.
    Abstract DOI PMID Cited by ~24 Download
  19. B. de Hoop, H. Gietema, S. van de Vorst, K. Murphy, R. van Klaveren and M. Prokop, "Pulmonary ground-glass nodules: increase in mass as an early indicator of growth", Radiology, 2010;255(1):199-206.
    Abstract DOI PMID Cited by ~199
  20. K. Murphy, B. van Ginneken, A. Schilham, B. de Hoop, H. Gietema and M. Prokop, "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis, 2009;13(5):757-770.
    Abstract DOI PMID Cited by ~275 Download

Preprints

  1. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", arXiv:1903.03349, 2019.
    Abstract arXiv

Papers in conference proceedings

  1. E. Calli, E. Sogancioglu, E. Scholten, K. Murphy and B. van Ginneken, "Handling label noise through model confidence and uncertainty: application to chest radiograph classification", Medical Imaging, 2019(1).
    Abstract DOI Cited by ~4
  2. E. Calli, K. Murphy, E. Sogancioglu and B. van Ginneken, "FRODO: Free rejection of out-of-distribution samples: application to chest x-ray analysis", Medical Imaging with Deep Learning, 2019.
    Abstract Url Cited by ~4
  3. C. Jacobs, K. Murphy, T. Twellmann, P. de Jong and B. van Ginneken, "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", The Fourth International Workshop on Pulmonary Image Analysis, 2011:177-182.
    Abstract Cited by ~2
  4. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng and J. Pluim, "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", Medical Image Analysis for the Clinic - A Grand Challenge, 2010:11-22.
    Abstract Cited by ~45
  5. S. Muenzing, K. Murphy, B. van Ginneken and J. Pluim, "Automatic detection of registration errors for quality assessment in medical image registration", Medical Imaging, 2009;7259:72590K1-72590K9.
    Abstract DOI Cited by ~10
  6. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J. Pluim, "Evaluation of 4D-CT Lung Registration", Medical Image Computing and Computer-Assisted Intervention, 2009;5761:747-754.
    Abstract DOI Cited by ~82
  7. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J. Pluim, "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", Medical Image Computing and Computer-Assisted Intervention, 2008;5242.
    Abstract DOI PMID Cited by ~86
  8. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring, "Quantitative Assessment of Registration in Thoracic CT", The First International Workshop on Pulmonary Image Analysis, 2008:203-211.
    Abstract Cited by ~3
  9. B. van Ginneken, A. Tan, K. Murphy, B. de Hoop and M. Prokop, "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", Medical Imaging, 2008;6915:69150X1-69150X10.
    Abstract DOI
  10. K. Murphy, A. Schilham, H. Gietema, M. Prokop and B. van Ginneken, "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", Medical Imaging, 2007;6514:651410-1-651410-12.
    Abstract DOI Cited by ~22

Abstracts

  1. K. Murphy, B. van Ginneken, J. Pluim, T. Altes, M. Prokop and E. de Lange, "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", Annual Meeting of the Radiological Society of North America, 2009.
    Abstract
  2. B. van Ginneken, K. Murphy, E. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P. de Jong and H. Gietema, "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", Annual Meeting of the Radiological Society of North America, 2009.
    Abstract Cited by ~3
  3. B. van Ginneken, B. de Hoop, E. van Rikxoort, K. Murphy and M. Prokop, "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract
  4. K. Murphy, M. Prokop, C. Schaefer-Prokop, H. Gietema, G. Nossent, B. van Ginneken, J. Pluim and Y. Arzhaeva, "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract
  5. K. Murphy, B. van Ginneken, E. van Rikxoort, B. de Hoop, J. Pluim and M. Prokop, "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", Annual Meeting of the Radiological Society of North America, 2008.
    Abstract Cited by ~1
  6. Y. Arzhaeva, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", Annual Meeting of the Radiological Society of North America, 2007:267.
    Abstract

PhD theses

  1. E. Çallı, "Deep learning methods towards clinically applicable Chest X-ray interpretation systems", PhD thesis, 2023.
    Abstract Url
  2. K. Murphy, "Development and evaluation of automated image analysis techniques in thoracic CT", PhD thesis, 2011.
    Abstract Url

Other publications

  1. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng, "Medical Image Analysis for the Clinic: a Grand Challenge", 2010.
    Abstract Url