Publications of Keelin Murphy

Papers in international journals

  1. K. Murphy, H. Smits, A. Knoops, M. Korst, T. Samson, E. Scholten, S. Schalekamp, C. Schaefer-Prokop, R. Philipsen, A. Meijers, J. Melendez, B. van Ginneken and M. Rutten, "COVID-19 on the Chest Radiograph: A Multi-Reader Evaluation of an AI System", Radiology, 2020;296:E166–E172. Abstract/PDF DOI PMID Cited by ~12
  2. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", Nature Scientific Reports, 2020;10:5492. Abstract/PDF DOI PMID Cited by ~8
  3. E. Sogancioglu, K. Murphy, E. Calli, E. Scholten, S. Schalekamp and B. Van Ginneken, "Cardiomegaly Detection on Chest Radiographs: Segmentation Versus Classification", IEEE Access, 2020;8:94631-94642. Abstract/PDF DOI
  4. C. Jacobs, E. van Rikxoort, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Computer-aided detection of pulmonary nodules: a comparative study using the public LIDC/IDRI database", European Radiology, 2016;26:2139-2147. Abstract/PDF DOI PMID Cited by ~54
  5. S. Muenzing, B. van Ginneken, K. Murphy and J. Pluim, "Supervised Quality Assessment Of Medical Image Registration: Application to intra-patient CT lung registration", Medical Image Analysis, 2012;16:1521-1531. Abstract/PDF DOI PMID Cited by ~43
  6. K. Murphy, J. Pluim, E. van Rikxoort, P. de Jong, B. de Hoop, H. Gietema, O. Mets, M. de Bruijne, P. Lo, M. Prokop and B. van Ginneken, "Toward automatic regional analysis of pulmonary function using inspiration and expiration thoracic CT", Medical Physics, 2012;39(3):1650-1662. Abstract/PDF DOI PMID Cited by ~49
  7. O. Mets, K. Murphy, P. Zanen, H. Gietema, J. Lammers, B. van Ginneken, M. Prokop and P. de Jong, "The relationship between lung function impairment and quantitative computed tomography in chronic obstructive pulmonary disease", European Radiology, 2012;22(1):120-128. Abstract/PDF DOI PMID Cited by ~70
  8. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng, K. Cao, K. Du, G. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M. Heinrich, J. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J. McClelland, S. Ourselin, S. Muenzing, M. Viergever, D. Nigris, D. Collins, T. Arbel, M. Peroni, R. Li, G. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J. Gee, M. Staring, S. Klein, B. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J. Pluim, "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge", IEEE Transactions on Medical Imaging, 2011;31(11):1901-1920. Abstract/PDF DOI PMID Cited by ~391
  9. K. Murphy, B. van Ginneken, S. Klein, M. Staring, B. de Hoop, M. Viergever and J. Pluim, "Semi-automatic construction of reference standards for evaluation of image registration", Medical Image Analysis, 2011;15(1):71-84. Abstract/PDF DOI PMID Cited by ~135
  10. B. van Ginneken, S. Armato, B. de Hoop, S. van de Vorst, T. Duindam, M. Niemeijer, K. Murphy, A. Schilham, A. Retico, M. Fantacci, N. Camarlinghi, F. Bagagli, I. Gori, T. Hara, H. Fujita, G. Gargano, R. Belloti, F. Carlo, R. Megna, S. Tangaro, L. Bolanos, P. Cerello, S. Cheran, E. Torres and M. Prokop, "Comparing and combining algorithms for computer-aided detection of pulmonary nodules in computed tomography scans: the ANODE09 study", Medical Image Analysis, 2010;14:707-722. Abstract/PDF DOI PMID Cited by ~229
  11. Y. Arzhaeva, M. Prokop, K. Murphy, E. van Rikxoort, P. de Jong, H. Gietema, M. Viergever and B. van Ginneken, "Automated estimation of progression of interstitial lung disease in CT images", Medical Physics, 2010;37(1):63-73. Abstract/PDF DOI PMID Cited by ~24
  12. B. de Hoop, H. Gietema, S. van de Vorst, K. Murphy, R. van Klaveren and M. Prokop, "Pulmonary ground-glass nodules: increase in mass as an early indicator of growth", Radiology, 2010;255(1):199-206. Abstract/PDF DOI PMID Cited by ~199
  13. K. Murphy, B. van Ginneken, A. Schilham, B. de Hoop, H. Gietema and M. Prokop, "A Large Scale Evaluation of Automatic Pulmonary Nodule Detection in Chest CT using Local Image Features and k-Nearest-Neighbour Classification", Medical Image Analysis, 2009;13(5):757-770. Abstract/PDF DOI PMID Cited by ~275

Preprints

  1. K. Murphy, S. Habib, S. Zaidi, S. Khowaja, A. Khan, J. Melendez, E. Scholten, F. Amad, S. Schalekamp, M. Verhagen, R. Philipsen, A. Meijers and B. van Ginneken, "Computer aided detection of tuberculosis on chest radiographs: An evaluation of the CAD4TB v6 system", arXiv:1903.03349, 2019. Abstract arXiv

Papers in conference proceedings

  1. E. Calli, E. Sogancioglu, E. Scholten, K. Murphy and B. van Ginneken, "Handling label noise through model confidence and uncertainty: application to chest radiograph classification", Medical Imaging, 2019(1). Abstract/PDF DOI Cited by ~4
  2. E. Calli, K. Murphy, E. Sogancioglu and B. van Ginneken, "FRODO: Free rejection of out-of-distribution samples: application to chest x-ray analysis", Medical Imaging with Deep Learning, 2019. Abstract/PDF Url Cited by ~4
  3. C. Jacobs, K. Murphy, T. Twellmann, P. de Jong and B. van Ginneken, "Computer-Aided Detection of Solid and Ground Glass Nodules in Thoracic CT images using two independent CAD systems", The Fourth International Workshop on Pulmonary Image Analysis, 2011:177-182. Abstract/PDF Cited by ~2
  4. K. Murphy, B. van Ginneken, J. Reinhardt, S. Kabus, K. Ding, X. Deng and J. Pluim, "Evaluation of Methods for Pulmonary Image Registration: The EMPIRE10 Study", Medical Image Analysis for the Clinic - A Grand Challenge, 2010:11-22. Abstract/PDF Cited by ~45
  5. S. Kabus, T. Klinder, K. Murphy, B. van Ginneken, C. Lorenz and J. Pluim, "Evaluation of 4D-CT Lung Registration", Medical Image Computing and Computer-Assisted Intervention, 2009;5761:747-754. Abstract/PDF DOI Cited by ~82
  6. S. Muenzing, K. Murphy, B. van Ginneken and J. Pluim, "Automatic detection of registration errors for quality assessment in medical image registration", Medical Imaging, 2009;7259:72590K1-72590K9. Abstract/PDF DOI Cited by ~10
  7. K. Murphy, B. van Ginneken, S. Klein, M. Staring and J. Pluim, "Semi-Automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration", Medical Image Computing and Computer-Assisted Intervention, 2008;5242. Abstract/PDF DOI PMID Cited by ~86
  8. K. Murphy, B. van Ginneken, J. Pluim, S. Klein and M. Staring, "Quantitative Assessment of Registration in Thoracic CT", The First International Workshop on Pulmonary Image Analysis, 2008:203-211. Abstract/PDF Cited by ~3
  9. B. van Ginneken, A. Tan, K. Murphy, B. de Hoop and M. Prokop, "Automated detection of nodules attached to the pleural and mediastinal surface in low-dose CT scans", Medical Imaging, 2008;6915:69150X1-69150X10. Abstract/PDF DOI
  10. K. Murphy, A. Schilham, H. Gietema, M. Prokop and B. van Ginneken, "Automated detection of pulmonary nodules from low-dose computed tomography scans using a two-stage classification system based on local image features", Medical Imaging, 2007;6514:651410-1-651410-12. Abstract/PDF DOI Cited by ~22

Abstracts

  1. B. van Ginneken, K. Murphy, E. van Rikxoort, I. Išgum, B. de Hoop, M. Prokop, P. de Jong and H. Gietema, "Quantification of Emphysema and Small Airway Disease in COPD Patients from Lobar Analysis of Volumetric Inspiration and Expiration Thoracic CT Scans", Annual Meeting of the Radiological Society of North America, 2009. Abstract Cited by ~3
  2. K. Murphy, B. van Ginneken, J. Pluim, T. Altes, M. Prokop and E. de Lange, "Comparison of airflow defects in asthma patients assessed by breath-hold inspiration and expiration CT and by hyperpolarized helium-3 magnetic resonance imaging", Annual Meeting of the Radiological Society of North America, 2009. Abstract
  3. K. Murphy, M. Prokop, C. Schaefer-Prokop, H. Gietema, G. Nossent, B. van Ginneken, J. Pluim and Y. Arzhaeva, "Improved Efficiency of Assessment of Interstitial Lung Disease Progression in CT of the Chest by Visualisation of Automatically-registered Image Pairs", Annual Meeting of the Radiological Society of North America, 2008. Abstract
  4. B. van Ginneken, B. de Hoop, E. van Rikxoort, K. Murphy and M. Prokop, "Relating Airway Morphology in Heavy Smokers to Pulmonary Function Impairment", Annual Meeting of the Radiological Society of North America, 2008. Abstract
  5. K. Murphy, B. van Ginneken, E. van Rikxoort, B. de Hoop, J. Pluim and M. Prokop, "Prediction of Obstructive Pulmonary Function by Quantitative Lobar Evaluation of Density Change between Inspiration and Expiration on Thoracic CT", Annual Meeting of the Radiological Society of North America, 2008. Abstract Cited by ~1
  6. Y. Arzhaeva, K. Murphy, M. Prokop, C. Schaefer-Prokop and B. van Ginneken, "Application of computerized texture analysis of CT lung images for estimation of interstitial lung disease progression", Annual Meeting of the Radiological Society of North America, 2007:267. Abstract

PhD theses

  1. K. Murphy, "Development and evaluation of automated image analysis techniques in thoracic CT", 2011. Abstract/PDF Url

Other publications

  1. B. van Ginneken, K. Murphy, T. Heimann, V. Pekar and X. Deng, "Medical Image Analysis for the Clinic: a Grand Challenge", 2010. Abstract/PDF Url